Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme169185g00001 ATGAGAAGATTCATTGGTGTTAGACAAAGACCATCAGGTAGATGGGTGGCTGAGATCAAAGACTCATCTCAACATGTAAGATTATGGCTTGGAACTTATGACACACCAGAAGAAGCAGCTCGAGCTTACGACGAAGCCGCTCGAGCTTTACGTGGTGAGAATGCTCGAACCAACTTCGCCGTCGCAACATCAATAGACAGTACTACACCAT 211 0.4597 MRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAVATSIDSTTP 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme169185g00001 70 FunFam ethylene-responsive transcription factor RAP2-11 2 61 - -
Trme169185g00001 70 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 68 - -
Trme169185g00001 70 SMART rav1_2 3 66 IPR001471 GO:0003700|GO:0006355
Trme169185g00001 70 Pfam AP2 domain 3 53 IPR001471 GO:0003700|GO:0006355
Trme169185g00001 70 PIRSF PTI6 1 70 IPR017392 GO:0003700
Trme169185g00001 70 CDD AP2 3 62 IPR001471 GO:0003700|GO:0006355
Trme169185g00001 70 Gene3D AP2/ERF domain 2 62 IPR036955 GO:0003700|GO:0006355
Trme169185g00001 70 ProSiteProfiles AP2/ERF domain profile. 3 60 IPR001471 GO:0003700|GO:0006355
Trme169185g00001 70 PRINTS Ethylene responsive element binding protein signature 26 42 IPR001471 GO:0003700|GO:0006355
Trme169185g00001 70 PRINTS Ethylene responsive element binding protein signature 4 15 IPR001471 GO:0003700|GO:0006355
Trme169185g00001 70 SUPERFAMILY DNA-binding domain 4 61 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme169185g00001 Trme-Chr169185 98 308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme169185g00001 3 60 AP2-EREBP Transcription Factor Family AT5G19790 74.138 5.40e-28 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme169185g00001 AP2 4.3e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme169185g00001 - K09286 mtr:25500954 129.798