Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16912g00001 GATATAGAGGCGAACAACCGAAAGGTTCAGGTATATGGTAGAAACCATACATTTGTGGAGACGAGATGGAAGAAACTTCGTGTTGGTGATGTGATTAAAGTGTACAAGGATGAATACTTTCCTTCTGATCTTCTTCTGCTTTCGTCAAGCTACGGGGACGGTGTTTGCTATGTCGAGACGATGAATCTTGATGGAGAAACTAATCTAAAACTAAAGCATGCCTTGGAGGTGACAACTCGTCTTAACGATGAAAAATCACTCCAGAAGTTTAGGGCTATGGTCAAATGTGAGGATCCTAATGAAAATCTGTACTCATTTATCGGAACTTTAAAATATGAGGGTGAAGAATATCCTCTTTCGTTGCAGCAAATCCTTTTACGAGATTCTAAGCTGAGAAATACCGAATATATCTACGGTGTTGTTATCTTCACTGGTCAGGATACGAAAGTGATGCAGAATTCCATTGATCCTCCATCGAAGCGAAGCAAAATTGAGAGAAAAATGGATGAGATAATCTACATTCTCTTCAGTACCTTGATTTTGATATCCTTTATCGGTTCTTTGTTTTTCGGTGTCAATACCCAAAAGGATATTAGCAGTGATGGAAATTACATAAGATGGTATCTTCATCCGGATGATTCGACCGTATTTTTCGATCCTAGAAGGGCAGGCCTTGCTTCAATTCTTCATTTTTTGACTGCCCTTATGTTGTATGGATATCTGATTCCGATATCACTTTACGTGTCGATAGAAGTTGTGAAAGTTCTTCAGAGTATTTTCATCAATCAAGATCAAGAAATGTATTTTGAAGAATCAGATAGGCCGGCTCACGCGCGCACATCTAATTTAAATGAAGAACTTGGTCAAGTTGATACCATATTGTCCGATAAAACCGGTACTTTGACATGTAACTCTATGGAGTTTGTCAAATGTTCCATAGGGGGTATTCCGTACGGCCGTGGTATTACGGAAGTGGAGAAGGCACTTGCTAGGAGAGCGAAGGATGGTGAATCCAAAAACGATGCTTATTCATCTGATTTCTTGAGTCAGAGTAGCGATGCTGTGGACTCTCAAAAGCCAATTAAGGGCTTTAACTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNGACATCATAGAGAAATTCTTTCGAGTTTTAGCTATATGTCATACAGCTATTCCTGATGTAGATAAAGCGTCGGGAGAAATTTCCTATGAAGCTGAGTCGCCAGATGAAGCCGCATTTGTCATAGCTGCAAGGGAGCTTGGTTTTGAGTTTTTTTCTAGGACACAAACAAACATATCGTTGCATGAACTGAATCATGAACGCGGAAAAAAGGTTGACAG 1364 0.3834 DIEANNRKVQVYGRNHTFVETRWKKLRVGDVIKVYKDEYFPSDLLLLSSSYGDGVCYVETMNLDGETNLKLKHALEVTTRLNDEKSLQKFRAMVKCEDPNENLYSFIGTLKYEGEEYPLSLQQILLRDSKLRNTEYIYGVVIFTGQDTKVMQNSIDPPSKRSKIERKMDEIIYILFSTLILISFIGSLFFGVNTQKDISSDGNYIRWYLHPDDSTVFFDPRRAGLASILHFLTALMLYGYLIPISLYVSIEVVKVLQSIFINQDQEMYFEESDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIGGIPYGRGITEVEKALARRAKDGESKNDAYSSDFLSQSSDAVDSQKPIKGFNXXXXXXXXXXXXXXXXXDIIEKFFRVLAICHTAIPDVDKASGEISYEAESPDEAAFVIAARELGFEFFSRTQTNISLHELNHERGKKVD 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16912g00001 454 Pfam E1-E2 ATPase 5 199 - -
Trme16912g00001 454 NCBIfam HAD-IC family P-type ATPase 230 316 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme16912g00001 454 SUPERFAMILY HAD-like 282 329 IPR036412 -
Trme16912g00001 454 Gene3D - 2 155 - -
Trme16912g00001 454 NCBIfam phospholipid-translocating P-type ATPase 1 448 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trme16912g00001 454 SUPERFAMILY Calcium ATPase, transduction domain A 12 152 IPR008250 -
Trme16912g00001 454 ProSitePatterns E1-E2 ATPases phosphorylation site. 296 302 IPR018303 -
Trme16912g00001 454 FunFam Phospholipid-transporting ATPase 1 155 - -
Trme16912g00001 454 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 447 - -
Trme16912g00001 454 SUPERFAMILY Calcium ATPase, transmembrane domain M 76 288 IPR023298 -
Trme16912g00001 454 Gene3D - 343 453 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16912g00001 Trme-Chr16912 57 1420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16912g00001 1 454 Primary Pumps ATPases AT1G26130 63.656 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16912g00001 K01530 - gmx:100779714 712.605