Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16910g00001 AGCTTGCTTGGCCTCACACCACTTGCTGAACGTGTGAGCTTTCTCACAGAACAAATTGCTGTCTACACTGGTCCTACAGTTGGAGGACTTCTTAATGCAACATGTGGGAATATTACTGAGCTGATTATAGCAATATTTGCTCTTAAAAGCAATCAAATTGCTGTTGTCAAGTATTCTCTTTTAGGTTCAATCCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTTCTTTGTGGTGGAATTGCGAACATTAGAGATGAGCAAAAATATGACAGAGACTCTGTTCCCTGGAACTTGAAGAGACAAGCAGATATGAACTCACTCATGCTGCTATTGGCATTGTTATGTCATTTGCTTCCATTGCTATTCACATACAGTGCTGCATCACCTGAACTCACAGCAGAACCTTCACTTTATTTATCAAGAGCTGCTAGCATTGTGATGTTGGGTGCATATTTTGTTTACTTGATCTTTCAACTATGGACACATAGGCAATTATTCGAAGCTGAAGAAGAAGGTGAATGTGAAGGTGAGAACAATTCGGCAGAAGAAGAGGCTGTGATTGGATTCTGGAGTGGATTTGCTTGGTTGGCTGGAATGACTGTTTTCATTGCT 615 0.4065 SLLGLTPLAERVSFLTEQIAVYTGPTVGGLLNATCGNITELIIAIFALKSNQIAVVKYSLLGSILSNLLLVLGTSLLCGGIANIRDEQKYDRDSVPWNLKRQADMNSLMLLLALLCHLLPLLFTYSAASPELTAEPSLYLSRAASIVMLGAYFVYLIFQLWTHRQLFEAEEEGECEGENNSAEEEAVIGFWSGFAWLAGMTVFIA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16910g00001 205 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 1 205 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trme16910g00001 205 Pfam Sodium/calcium exchanger protein 1 161 IPR004837 GO:0016020|GO:0055085
Trme16910g00001 205 Gene3D - 25 203 IPR044880 -
Trme16910g00001 205 FunFam Vacuolar cation/proton exchanger 25 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16910g00001 Trme-Chr16910 1 1445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16910g00001 1 205 Antiporters AT2G38170 66.827 1.14e-80 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16910g00001 K07300 - psat:127087560 294.278