Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16907g00001 ATGGCTACTCCGCCTCAAAAGAATGATGCTGATGCAGAAGCCAAATCTGAATGCCTCTATGTAAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTGAATGGTTTTAGCTCTTATAGGGAACTTTCTTCAGCACTCGAAAAGATGTTCAGTTGTTTTACAATCAGTCAATGTGGCTCATATGGAGTTTCTTGTCAAGAAAAAAATTTAAGCGAAAGTAGATTGGTGGATCTTCTTCATGGTTCGGAGTATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAAATGTTCACCGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGCTCTGAAGCAATTGGACTAGCACCTCGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 420 0.4238 MATPPQKNDADAEAKSECLYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCQEKNLSESRLVDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16907g00001 139 Gene3D - 12 133 - -
Trme16907g00001 139 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 126 IPR003311 GO:0005634|GO:0006355
Trme16907g00001 139 ProSiteProfiles PB1 domain profile. 18 121 IPR000270 GO:0005515
Trme16907g00001 139 SUPERFAMILY CAD & PB1 domains 16 120 - -
Trme16907g00001 139 FunFam Auxin-responsive protein 13 131 - -
Trme16907g00001 139 Pfam AUX/IAA family 8 130 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16907g00001 Trme-Chr16907 134 1269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16907g00001 21 129 B3 DNA Binding Superfamily AT4G23980 32.110 1.73e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trme16907g00001 AUX_IAA 5.1e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16907g00001 K14484 - gmx:100778529 251.521