Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16883g00001 ATGGACATATGCATATGGCAATTCCTCATTGCTGAAGAAGGCCCGTCTAAAGAATTCAATGATTTCCGTACAAAGTTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCCGATGTGGATGGTAATGGAGCTGTCTTCAGCAAAGCAACGAGCTCAAAAAATGCAGCAGGGAGTAGCAAGGGGAGAGCTGCGAGAATGCGAATCAGCAGAACGGCTGATGATAGTCCCTGGTCCTGCGAGCATTGTACCTCTATGAATGCCAGATCTTTATCCACATGCCAGATTTGCAATCAACGTAGATGA 339 0.4454 MDICIWQFLIAEEGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDGNGAVFSKATSSKNAAGSSKGRAARMRISRTADDSPWSCEHCTSMNARSLSTCQICNQRR 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16883g00001 112 SMART zf_4 87 111 IPR001876 -
Trme16883g00001 112 ProSitePatterns Zinc finger RanBP2-type signature. 89 108 IPR001876 -
Trme16883g00001 112 SUPERFAMILY Ran binding protein zinc finger-like 85 112 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16883g00001 Trme-Chr16883 599 1227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16883g00001 13 112 ARIADNE family AT1G65430 55.000 2.50e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16883g00001 K11968 - vum:124843329 159.073