Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme168806g00001 ATGGGCGGTATTGGCAAGACAACTCTTGCAGCTGCAGTGTATAACCGTCTTTGTTTTGAATATGAAGGATGTTGCTTTATGGCAAACATAACAGAAGAATCAGAGAAGCATGGAATGATTTATCTTAAGAATAAAATTCTCTCTATATTGCTAAATGAAAATGATCTACATATCGGTACACCTAATGGAGTTCCGCCTTATGTTAAAAGAAGGCTGGTTCGTAAAAAGGTTCTTCTTGTTCTTGACGATATCAATGATTTAGAGCACCTAGAGAATTTAGTTGGAGGACTTGATTGGTTTGGATCTGGTAGCAGAATCATTGTAACAACCAGAGATAAGCAAGTGCTTGGTAAAAGAGTCAATTGTATATATGAGGCCAAGGCATTGGAGTCTGATGATGCTATTAAACTTTTCATC 417 0.3693 MGGIGKTTLAAAVYNRLCFEYEGCCFMANITEESEKHGMIYLKNKILSILLNENDLHIGTPNGVPPYVKRRLVRKKVLLVLDDINDLEHLENLVGGLDWFGSGSRIIVTTRDKQVLGKRVNCIYEAKALESDDAIKLFI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme168806g00001 139 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 138 IPR044974 GO:0006952
Trme168806g00001 139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 139 IPR027417 -
Trme168806g00001 139 Pfam NB-ARC domain 1 138 IPR002182 GO:0043531
Trme168806g00001 139 Gene3D - 1 123 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme168806g00001 Trme-Chr168806 1 417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme168806g00001 1 138 WRKY Transcription Factor Family AT5G45050 39.568 2.53e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme168806g00001 - - lja:Lj3g3v0323300.1 229.18