Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16874g00001 ATGATGAATTCAGAAACGCAACCCGAAACGGCGTCGTACTGGTGCTACAGCTGCACACGCTTCGTTAACCTATCAGATCACACCAACATCGTCTGTCCACACTGCGATAACGGTTTCGTTGAAGAGATCCAAGCCGGCGACTCACCTCACCACCGTCTCAGTCCTTTTCCCGACGAAACCGTTTCTTCAAGAAGACAAGCCTTCCGCCGCCGCCGTCGTGACGCTGGAAGTCGTTCACCTTTCAATCCTGTCATCGTTCTCCGTGGTAACGGTGAAGACGGTAACGATCAAGACGGTGGTAGCGCTTTTGAACTTTTTTACGATGACGGTGACGGTTCTGGTTTACGTCCGTTACCACCGACTGTTTCGGAGTTTCTGCTTGGATCTGGATTTGATCGGTTGTTGGAACAGTTTTCTCAGATCGAGATGAACGGTTTTGGACGGCCGGAGAATCCGCCGGCATCAAAGGCGGCAATTGAATCTATGCCGACGGTCGAGATCTCTGAGGCGCAGGTTAGCTGCGATATGCACTGTGCTGTTTGCAAAGAAGCTTTTGAGTTAGGCGTGGAAGCGCGTGAGTTACCTTGCAAGCATATCTACCATTCCGATTGCATTCTTCCATGGCTGACTGTGCGGAACTCTTGCCCTGTGTGCCGCCACGAGCTTCCTTCGGATCTTAATAACCCTATTGAAACTAGGGTTTCTGGTCAAATCGATGAAGAAGCGATTGGGTTAACTATATGGAGGTTACCDGGTGGTGGATTCGCTGTTGGAAGATTCTCCGGCGGAAGAAGTGCCGGGGAGAGTCATTTCCCGGTTGTGTACACTGAGATGGACGGTGGACTGAATGCAAACGGAGCTCCGAGAAGAATTTCTCGAACG 882 0.5102 MMNSETQPETASYWCYSCTRFVNLSDHTNIVCPHCDNGFVEEIQAGDSPHHRLSPFPDETVSSRRQAFRRRRRDAGSRSPFNPVIVLRGNGEDGNDQDGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEISEAQVSCDMHCAVCKEAFELGVEARELPCKHIYHSDCILPWLTVRNSCPVCRHELPSDLNNPIETRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNANGAPRRISRT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16874g00001 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 226 IPR013083 -
Trme16874g00001 294 SMART ring_2 178 218 IPR001841 -
Trme16874g00001 294 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Trme16874g00001 294 MobiDBLite consensus disorder prediction 49 100 - -
Trme16874g00001 294 FunFam E3 ubiquitin-protein ligase RING1-like 140 225 - -
Trme16874g00001 294 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Trme16874g00001 294 Pfam Protein of unknown function (DUF1117) 243 293 IPR010543 -
Trme16874g00001 294 SUPERFAMILY RING/U-box 158 226 - -
Trme16874g00001 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 56 223 - -
Trme16874g00001 294 Pfam Ring finger domain 177 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16874g00001 Trme-Chr16874 83 964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16874g00001 117 225 C3H Transcription Factor Family AT5G01980 45.872 2.64e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16874g00001 K11982 - gmx:100804867 453.751