Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16872g00001 AGAAACTTGGAAAATAGTTTGAATAAGACAAAATCTTCTGAAGCAAGTCAGGAAGTTTCGGTGGAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCCGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATCATAGATAAAATTTCAAAAAGGTCCAAGGGCTATGCATTTATTGAATACACCACCGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGACTACTCCTCCAAGATACAATACGGGTCGAGCCAGACCATCTGCTTGA 351 0.3989 RNLENSLNKTKSSEASQEVSVETKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPPRYNTGRARPSA 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16872g00001 116 Gene3D - 2 116 IPR012677 -
Trme16872g00001 116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 92 IPR000504 GO:0003723
Trme16872g00001 116 SUPERFAMILY RNA-binding domain, RBD 15 113 IPR035979 GO:0003676
Trme16872g00001 116 SMART rrm1_1 25 98 IPR000504 GO:0003723
Trme16872g00001 116 PANTHER NUCLEOLAR PROTEIN 8 12 110 - -
Trme16872g00001 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16872g00001 Trme-Chr16872 497 1276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16872g00001 16 104 C2H2 Transcription Factor Family AT2G19380 32.584 1.49e-12 60.8