Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme168579g00001 ATGATGTGTTTTGGATTCCGTAAAATTGACACCGACAAATGGGAGTTTTTCAATGAAGGTTTCCAGAAAGGGAAGAAGCACTTACTGAAGAACATTCAAAGGCGCCGGTCATCTCAACCTCAGCAAGTTGGTAACTATGTTGGATCTTCTTCTGATGCAG 160 0.4188 MMCFGFRKIDTDKWEFFNEGFQKGKKHLLKNIQRRRSSQPQQVGNYVGSSSDA 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme168579g00001 53 Gene3D - 1 36 IPR036388 -
Trme168579g00001 53 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 43 IPR027725 -
Trme168579g00001 53 MobiDBLite consensus disorder prediction 34 53 - -
Trme168579g00001 53 Pfam HSF-type DNA-binding 3 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme168579g00001 53 SUPERFAMILY "Winged helix" DNA-binding domain 4 35 IPR036390 -
Trme168579g00001 53 MobiDBLite consensus disorder prediction 33 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme168579g00001 Trme-Chr168579 38 474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme168579g00001 1 43 HSF AT5G03720 69.767 6.29e-16 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trme168579g00001 HSF_DNA-bind 7.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme168579g00001 K09419 - gmx:100780835 88.9669