Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1682g00001 ATGCGGAAAGCAGTTGATTCATTGGTGTATGAGGTTGAGGCTCGTCTGAGGAACCCTACTAATGGCTTTTTGGATTTTGTTCACAATCTTGAAAATTGGTTGAAGGAAGTTCAACAGGAAATCGATAATGTGAAGAGTGAACTGACCAAATATCTCAATCTTGAGGTCATTCAATTTGTGATGAACAATCTTGGTTATTAG 201 0.3781 MRKAVDSLVYEVEARLRNPTNGFLDFVHNLENWLKEVQQEIDNVKSELTKYLNLEVIQFVMNNLGY 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1682g00001 66 Pfam Lateral organ boundaries (LOB) domain 2 45 IPR004883 -
Trme1682g00001 66 Coils Coil 27 54 - -
Trme1682g00001 66 ProSiteProfiles LOB domain profile. 1 48 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1682g00001 Trme-Chr1682 1555 1755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1682g00001 4 52 AS2 family AT5G66870 44.898 2.47e-09 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme1682g00001 LOB 5.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1682g00001 - K25609 vvo:131607884 68.1662