Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16810g00001 CTGCCAAAAATCAGCTTCTATGATAGTAATGATAATGCAGCTGTGCTCCCTCAGCCTCTTATAGAGATCACTGCACCAAGGGAAGGTGATCTGAGCAGGTTGATTGAATTGTCAATAACATCATTGGTTGTAATATTTGTGGTTCTTTGGATGTTTTACCAAAATCGATTTACAAAAAGAGTTACATCAAATGTCCGAATCAGTGACTCAGATTTGAAAAGCCCGCCTCCTAAGAAAAAGAGAGCACGCAAGTCCGGAAAAAGCAATGTCATTGTTGACAAACAGGGTAATAATTTGTCTTCAATTGAGGAGAATATACGAATACATAAGGAAGCAGAAAATGAAGCACGGTTACACTATAATAAAGTTAACGGGCGCATGATTGGTAAGCTGATTGTATCAAATGAACAAATTGCGAAGGGAAGTAATGGTACCATTGTCTTTGAGGGTATATATGAAGGTCGRRCAGTTGCYGTCAAACGTCTTGTTACGGCTCATCATGATAAAGCTCATAAAGAAATCCAAAATCTCATTGCTTCTGACCGTCATCCAAATATTGTTCGATGGTATGGCGTGGAATCTGATCACGATTTTGTTTACCTTGCTCTGGAGCGTTGTGCGTTCAACTTGGATGATTTGATAACTGTTTATTCAGATATGTCAGAGAATTCAGTGTTAAGCAAGAATCCAGCTTATGAATTTTTCAAAAAGGCCCAGATAGAAACACATGGGGATGATATGCGGTGTCTTTGGAAAACAAATGGTTATCCATCTCCTCTTTTACTAAAGCTTATGAGGGAAGTGGTTTCCGGGCTTGCTCATTTGCATGAACTAGGAATAATACATCGGGATTTGAAACCCCAAAATGTTTTGATAATCAAGGAAAAATCATTATGTGCCAAGCTTTCTGATATGGGGATTAGTAAACAACTTCCTGAAGATATGTCTTCTTTAGGTCATACTTCTACYGGTRAGTACAAAAAGTTTGTGCTTTTAGCATTCACTATTACTAATTAG 1017 0.3776 MPKISFYDSNDNAAVLPQPLIEITAPREGDLSRLIELSITSLVVIFVVLWMFYQNRFTKRVTSNVRISDSDLKSPPPKKKRARKSGKSNVIVDKQGNNLSSIEENIRIHKEAENEARLHYNKVNGRMIGKLIVSNEQIAKGSNGTIVFEGIYEGRXVAVKRLVTAHHDKAHKEIQNLIASDRHPNIVRWYGVESDHDFVYLALERCAFNLDDLITVYSDMSENSVLSKNPAYEFFKKAQIETHGDDMRCLWKTNGYPSPLLLKLMREVVSGLAHLHELGIIHRDLKPQNVLIIKEKSLCAKLSDMGISKQLPEDMSSLGHTSTGXYKKFVLLAFTITN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16810g00001 338 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 124 204 - -
Trme16810g00001 338 Gene3D Transferase(Phosphotransferase) domain 1 109 337 - -
Trme16810g00001 338 Pfam Protein kinase domain 135 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16810g00001 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Trme16810g00001 338 ProSiteProfiles Protein kinase domain profile. 132 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16810g00001 338 SMART serkin_6 132 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16810g00001 338 PANTHER IRE1-RELATED 100 324 IPR045133 GO:0004521|GO:0004674|GO:0030968
Trme16810g00001 338 SUPERFAMILY Protein kinase-like (PK-like) 122 323 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16810g00001 Trme-Chr16810 2 1235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16810g00001 134 333 Receptor kinase-like Gene Family AT1G53420 29.612 1.52e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trme16810g00001 Pkinase 2.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16810g00001 K08852 - gmx:102661527 385.185