Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme167980g00001 ATGAAACGTGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCGGTTACAAAACGGCCCCATCTATCTATAGTGACAGAGTATTTGCCTAGAGGTAGTTTATTCCGCCTGATACATAGGCCAGCAACTAGTGAGATTAAGGATCCAAGGAGAAGATTACGAATGGCTATAGACGTGGCTAAAGGGATCAATTATCTCCACTGTCTGAAGCCTCCAATCGTGCACTGGGATCTCAAATCCCCAAACCTGTTGGTAGACAAAAATTGGAATGTAAAGGTATAA 282 0.4397 MKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLFRLIHRPATSEIKDPRRRLRMAIDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWNVKV 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme167980g00001 93 Pfam Protein tyrosine and serine/threonine kinase 1 93 IPR001245 GO:0004672|GO:0006468
Trme167980g00001 93 SUPERFAMILY Protein kinase-like (PK-like) 1 93 IPR011009 -
Trme167980g00001 93 ProSiteProfiles Protein kinase domain profile. 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme167980g00001 93 ProSitePatterns Serine/Threonine protein kinases active-site signature. 73 85 IPR008271 GO:0004672|GO:0006468
Trme167980g00001 93 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 93 - -
Trme167980g00001 93 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme167980g00001 Trme-Chr167980 30 493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme167980g00001 1 93 MAP Kinase Kinase Kinase AT4G24480 86.022 6.60e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trme167980g00001 PK_Tyr_Ser-Thr 6.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme167980g00001 - - vvo:131620676 187.578