Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme167934g00001 ATGGCAAGGAAGAACAAAGAGAAATATGCTGAAGAAATGGAAGCTTACAAACAGAAAAAAGAAGAGGAGGCTGCAAATCTGATGAAGGAAGAGGAAGAACATATGAAACTTCAGAAACATGAGGCCTTGCAATTGCTCAAGAAGAAGGAAAAAACTGAAAACATGATCAAGGAAACAAAATTGAATCGTCAGAANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNCATCCTCATATATTCTTTTCAGCAAAGAGGCAAGGAAGAACATATTGGAGGAACGTCCAGGAATTGGTGCAAACATGCTGAGTACACTTGTTTCATTGAAGTGGAAGGATATGAGTGAGGAAGATAAACAAGTGTGGAATGGAAAAGCATCTGAAGCAATGGATGCATACAAGAAGG 430 0.3326 MARKNKEKYAEEMEAYKQKKEEEAANLMKEEEEHMKLQKHEALQLLKKKEKTENMIKETKLNRQXXXXXXXXXXXXXXXXXXXXXSSYILFSKEARKNILEERPGIGANMLSTLVSLKWKDMSEEDKQVWNGKASEAMDAYKK 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme167934g00001 143 Gene3D High mobility group box domain 44 143 IPR036910 -
Trme167934g00001 143 Coils Coil 42 64 - -
Trme167934g00001 143 Coils Coil 2 40 - -
Trme167934g00001 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 143 IPR044601 GO:0003677
Trme167934g00001 143 SUPERFAMILY HMG-box 85 143 IPR036910 -
Trme167934g00001 143 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 81 143 IPR009071 -
Trme167934g00001 143 SMART hmgende2 80 143 IPR009071 -
Trme167934g00001 143 Pfam HMG (high mobility group) box 86 143 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trme167934g00001 HMG_box 1.5e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme167934g00001 K09273 - gmx:100783033 146.747