Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme16771g00001 | ATGGATGCTTCTGGGCTGTCTAAAGGCTATGGTTTTGTGCAATTTGAGCATGAAGAATCTGCACAAAGTGCAATTGACAAGTTAAATGGCATGCTGATCAATGATAAGCCGGTCTATGTTGGTCATTTCCAACGGAAGCAGGATAGAGATAATGCRTTGAGTACTGCRAAGTTTAATAAYGTCTATGTGAAAAACCTATCGGAAGGAGTTACGGATGATGACTTGAAGAACRTTTTTGGAGAATATGGAACTATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAAAGAAATTTGATGAAAAGGAGTGGTATGTTGGAAAAGCCCTAAAAAAATATGAAAGGGAGCTTGAACTGAAAGAAAAACATGAGCAGAGTATGAAGGAAACTGTTGACAAGTTTTATGGTGCAAACTTGTATCTCAAAAACTTGGATGATAGTGTCAGTGATGAAAAACTTAGCGAACTGTTCTCCGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCAACAGGGAATTAGTAGGGGATCTGGATTTGTTGCTTTTTCAACTCCCGAGGAAGCAACTCGAGCTCTTGCTGCGATGAATGGAAAAATGGTTGCTGGCAAACCTCTCTATGTTGCTCCCGCACAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAGGTAATATTGCACAACAATGGATCAACAGTTAATTCTATGCTTTATAATACCGTGTGGTAA | 804 | 0.3881 | MDASGLSKGYGFVQFEHEESAQSAIDKLNGMLINDKPVYVGHFQRKQDRDNALSTAKFNNVYVKNLSEGVTDDDLKNXFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDEKEWYVGKALKKYERELELKEKHEQSMKETVDKFYGANLYLKNLDDSVSDEKLSELFSEFGTVTSCKILRDQQGISRGSGFVAFSTPEEATRALAAMNGKMVAGKPLYVAPAQKKEERKARLQVILHNNGSTVNSMLYNTVW | 267 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme16771g00001 | 267 | FunFam | Polyadenylate-binding protein | 49 | 144 | - | - | |
| Trme16771g00001 | 267 | FunFam | Polyadenylate-binding protein | 145 | 250 | - | - | |
| Trme16771g00001 | 267 | PANTHER | RNA BINDING PROTEIN | 4 | 253 | - | - | |
| Trme16771g00001 | 267 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 162 | 239 | IPR000504 | GO:0003723 | |
| Trme16771g00001 | 267 | Gene3D | - | 1 | 56 | IPR012677 | - | |
| Trme16771g00001 | 267 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 1 | 45 | IPR000504 | GO:0003723 | |
| Trme16771g00001 | 267 | Gene3D | - | 157 | 247 | IPR012677 | - | |
| Trme16771g00001 | 267 | Coils | Coil | 135 | 155 | - | - | |
| Trme16771g00001 | 267 | SMART | rrm2_1 | 60 | 132 | IPR003954 | GO:0003676 | |
| Trme16771g00001 | 267 | SMART | rrm2_1 | 163 | 235 | IPR003954 | GO:0003676 | |
| Trme16771g00001 | 267 | Gene3D | - | 57 | 156 | IPR012677 | - | |
| Trme16771g00001 | 267 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 59 | 136 | IPR000504 | GO:0003723 | |
| Trme16771g00001 | 267 | SMART | rrm1_1 | 60 | 132 | IPR000504 | GO:0003723 | |
| Trme16771g00001 | 267 | SMART | rrm1_1 | 163 | 235 | IPR000504 | GO:0003723 | |
| Trme16771g00001 | 267 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 138 | IPR035979 | GO:0003676 | |
| Trme16771g00001 | 267 | SUPERFAMILY | RNA-binding domain, RBD | 162 | 250 | IPR035979 | GO:0003676 | |
| Trme16771g00001 | 267 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 61 | 129 | IPR000504 | GO:0003723 | |
| Trme16771g00001 | 267 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 38 | IPR000504 | GO:0003723 | |
| Trme16771g00001 | 267 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 164 | 232 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme16771g00001 | Trme-Chr16771 | 441 | 1418 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme16771g00001 | 7 | 254 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.887 | 2.33e-44 | 156 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme16771g00001 | K13126 | - | pvy:116125579 | 383.259 |