Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16768g00001 CCTCCTCCTCCTCGACAATCTGGTGTTGGCAGTGCTCGACCTCCTGCTACTCCTTCCCCACATTCAACACTAGCCGGTGCCAAACCTGCTGCTCTTCGTCCTCCGCTACCCCCTGCTCCGTCTGGTGCCAAACCTAGTCCTCCACCACCCCCTGCTCCGCCTGGTGCCAAACGTAGTCCTCCACCACCCCCTGCTCCGCCTGGTGCCAAACCTAGTCCTCCTCCCCCTCCACCACCAGCACCACATGGTGCTAAACCTGGTCCTCATCCACCTCCTCCTCCTCCTAAGAGTGGTGTAGCTCCTCCTCGTCCTCCAATTGGCCCAAAGGTTGGTGGACTAAAAGCTACAGCGAATGCTGAAGCAGGCGCAGAAGGTGGAGCTGATACTTCCAAAGCCAAACTAAAGCCATTTTTCTGGGATAAGGTTCAAGCTAATTCAGATCAATCAATGGTTTGGAATCAGATCAAATCAGGATCGTTCCAGTTTAACGAAGAGATGATAGAGACACTTTTTGGTTATAATGCTGTAAATAATGGTCAACGACAAAAGGAGTCTTCCTCCTCCCAAGATCCTTCACCTCAGTATATCCAGATCGTTGACAAAAAGAAATCACAAAATTTATTAATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTTGTGATGCACTCTATGAAGGAAATGAGCTACCGTCGGAGTTCCTTCAAACCTTGTTGAAGATGGCGCCAACATCAGACGAAGAACTTAAGCTTAGACTTTTTAGTGCTGATCTGTCTCAACTTGGGCCTGCTGACCGTTTCCTGAAAGCCATGGTTGACATTCCCTTTGCCTTTAAGCGAATGGAAGTACTGCTTTTTATGTGTACATTTAAAGAGGAGCTCACTACTACTATGGAGTCTTTTGCAATTTTAGAGGTATGA 924 0.4794 PPPPRQSGVGSARPPATPSPHSTLAGAKPAALRPPLPPAPSGAKPSPPPPPAPPGAKRSPPPPPAPPGAKPSPPPPPPPAPHGAKPGPHPPPPPPKSGVAPPRPPIGPKVGGLKATANAEAGAEGGADTSKAKLKPFFWDKVQANSDQSMVWNQIKSGSFQFNEEMIETLFGYNAVNNGQRQKESSSSQDPSPQYIQIVDKKKSQNLLILLRALNVTMEEVCDALYEGNELPSEFLQTLLKMAPTSDEELKLRLFSADLSQLGPADRFLKAMVDIPFAFKRMEVLLFMCTFKEELTTTMESFAILEV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16768g00001 307 PRINTS Proline rich extensin signature 11 23 - -
Trme16768g00001 307 PRINTS Proline rich extensin signature 1 5 - -
Trme16768g00001 307 PRINTS Proline rich extensin signature 60 76 - -
Trme16768g00001 307 PRINTS Proline rich extensin signature 29 50 - -
Trme16768g00001 307 Pfam Formin Homology 2 Domain 128 305 IPR015425 -
Trme16768g00001 307 MobiDBLite consensus disorder prediction 1 113 - -
Trme16768g00001 307 SUPERFAMILY Formin homology 2 domain (FH2 domain) 193 305 - -
Trme16768g00001 307 ProSiteProfiles Formin homology-2 (FH2) domain profile. 124 307 IPR015425 -
Trme16768g00001 307 MobiDBLite consensus disorder prediction 31 108 - -
Trme16768g00001 307 Gene3D Formin, FH2 domain 126 307 IPR042201 -
Trme16768g00001 307 PANTHER FORMIN-RELATED 22 307 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16768g00001 Trme-Chr16768 3 1220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16768g00001 102 307 FH2 protein (formin) Gene Family AT5G54650 63.592 1.26e-80 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16768g00001 - - gmx:100793413 335.88