Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16760g00001 ATGAATATGTCTAGCTTGCAGAAAGTTTCTCTTAAAAATAATGAGCTTCAGGGACCTTTTCCTGTTTTTAAAGATAAAAATGTGACAGTTGAAGCTGATGGGTCAAATAATTTTTGTCTTGGTAATGAACCAGGACCTTGTAATGATACGGTTATGATTATGCTTCAAATTGCTGAGGGATTTGGGTATCCTATTAAATTGGCGCAGGAGTGGAAAGGGAATGATCCTTGTCAAGGAGGTCAAAGTTGGCAGTTTGTTACGTGTGACAAGGATAAGAATATTGTGTCTGTGATTTTAGTGAAGCAGAATTTGCAGGGAACAATTTCGCCTGCTTTTGCCAATTTGAAAAAATTGAAGAAATTGAATCTATCTGGGAATAATTTAACTGGTTCTATACCTCAGAGTTTGACTACATTGTCTCAGCTTGAGACTCTTGATGTCTCTAACAATAACCTATCGGGAGAGGTTCCCAAATTCTCACCGAAGGTGACGTTAGTAACTGGTGGTAATGTTTGGATTGGTAAAAATCCTGATTCTGGTCCCAATGGAAGGGCTGATGGATCGGGAAAGGGTAATTCGATGACGCCAGGTTCGATTGCTGGTATAGTGATTGGTGTTGTGCTTTTTGTTGTTGCTGTGTTGTTTGTTTCTTGGAAGTGTTATTCTAGAAAGCGGCTTCGGAAATTTGCAAGGGTTAGTAATCCTGAAAATGGGGAAGGAAATGTTAAGCTTGATCTTGCATGTGTTTCGAATGGATATGGTGGTGTTCCGAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCATAGTCAGCTTCATGGTTTTGATGGGGGAGGTGATGTAAATCCTACCATTTCGATTCATATTCTTCGACAAGTGACAAATGATTTCAGCGACGATAACATTTTGGGAAGGGGAGGGTTTGGTATTGTTTATAAAGGGGAGTTACCTGATGGAACTAAAATTGCTGTCAAGAGGATGATATCCGTTGCATCGGGAAGCAAAGGGTTGAATGAGTTCGAAGCAGAGATTGCTGTTCTTACTAAGGTTAGGCATAGACATCTGGTTGCTCTTATGGGATATTGCATCAATGGAAATGAGAGGCTTTTGGTGTATGAGCATATGCCTCAAGGGACATTAACGCAGCATCTGTTTGAATGTCGTGAACATGGGTATACTCCTTTGACATGGAAACAAAGATTGGTAATAGCTTTGGATGTTGGACGGGGAGTGGAATACTTGCACAGCTTAGCTCGGCAAAGCTTCATTCACAGAGACTTAAAACCATCAAATATACTATTAGGCGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAACGCACCGGATGGGAAGTATTCTATTGAGACAAAGTTGGCTGGAACATTTGGATATCTTGCACCCGAGTATGCAG 1420 0.4085 MNMSSLQKVSLKNNELQGPFPVFKDKNVTVEADGSNNFCLGNEPGPCNDTVMIMLQIAEGFGYPIKLAQEWKGNDPCQGGQSWQFVTCDKDKNIVSVILVKQNLQGTISPAFANLKKLKKLNLSGNNLTGSIPQSLTTLSQLETLDVSNNNLSGEVPKFSPKVTLVTGGNVWIGKNPDSGPNGRADGSGKGNSMTPGSIAGIVIGVVLFVVAVLFVSWKCYSRKRLRKFARVSNPENGEGNVKLDLACVSNGYGGVPSELQSQSSGDHSQLHGFDGGGDVNPTISIHILRQVTNDFSDDNILGRGGFGIVYKGELPDGTKIAVKRMISVASGSKGLNEFEAEIAVLTKVRHRHLVALMGYCINGNERLLVYEHMPQGTLTQHLFECREHGYTPLTWKQRLVIALDVGRGVEYLHSLARQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSIETKLAGTFGYLAPEYA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16760g00001 473 SUPERFAMILY Protein kinase-like (PK-like) 282 472 IPR011009 -
Trme16760g00001 473 PRINTS Leucine-rich repeat signature 139 152 - -
Trme16760g00001 473 PRINTS Leucine-rich repeat signature 118 131 - -
Trme16760g00001 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Trme16760g00001 473 Gene3D Phosphorylase Kinase; domain 1 261 373 - -
Trme16760g00001 473 ProSiteProfiles Leucine-rich repeat profile. 117 140 IPR001611 GO:0005515
Trme16760g00001 473 PANTHER OSJNBA0070M12.3 PROTEIN 1 473 - -
Trme16760g00001 473 FunFam receptor protein kinase TMK1 255 373 - -
Trme16760g00001 473 Pfam Protein kinase domain 297 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16760g00001 473 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Trme16760g00001 473 ProSiteProfiles Protein kinase domain profile. 296 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16760g00001 473 SMART serkin_6 296 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16760g00001 473 Gene3D Ribonuclease Inhibitor 50 176 IPR032675 -
Trme16760g00001 473 FunFam Leucine-rich repeat receptor-like kinase 49 176 - -
Trme16760g00001 473 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Trme16760g00001 473 SUPERFAMILY L domain-like 50 159 - -
Trme16760g00001 473 Gene3D Transferase(Phosphotransferase) domain 1 374 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16760g00001 Trme-Chr16760 9 1428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16760g00001 175 473 Trihelix Transcription Factor Family AT5G38560 38.994 6.75e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme16760g00001 Pkinase 2.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16760g00001 K00924 - gmx:100286794 623.624