Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme167609g00001 GGTTGTGAGATACTTGATGGAGTCCGTGGTCACTTTTCATGTGAATTTAATGTAACGAATGCTGTAATGACATTAATTCTTCCAGATTCTATTAAGCTTGAGTATGATCTAACTTGTGCAATTTGTCTGGATTTTGTTTTCAATCCATATACATTGAGTTGTGGACACTTCTTCTGCAAGTCATGTGCTTGCTCTGCTGCGTCTGTGATGACTTTCCAAGGCCTTAAAGCTGCAAGTCCAGAGTCAAAGTGTCCCATATGCAGAGAGGTATGCATTCTGTACTATTAG 288 0.3958 GCEILDGVRGHFSCEFNVTNAVMTLILPDSIKLEYDLTCAICLDFVFNPYTLSCGHFFCKSCACSAASVMTFQGLKAASPESKCPICREVCILYY 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme167609g00001 95 SUPERFAMILY RING/U-box 31 90 - -
Trme167609g00001 95 ProSitePatterns Zinc finger RING-type signature. 54 63 IPR017907 -
Trme167609g00001 95 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 7 92 IPR033326 -
Trme167609g00001 95 SMART ring_2 39 87 IPR001841 -
Trme167609g00001 95 ProSiteProfiles Zinc finger RING-type profile. 39 88 IPR001841 -
Trme167609g00001 95 Pfam RING-type zinc-finger 39 85 IPR027370 -
Trme167609g00001 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 94 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme167609g00001 Trme-Chr167609 55 435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme167609g00001 39 88 C3H Transcription Factor Family AT2G42030 36.000 5.00e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme167609g00001 K16275 - gmx:100781704 163.696