Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1673g00001 ATGAAGGGGAAGGAAGTTTTAAAATATGAACAACATCAACCGTCAAATTCCAAGATGCCTCTTAACATCAATCACACTAAGAATGATTCAATTTGTGGGTTGAGGATGCAAAAATATGAATTTTCCACCCCTTCAATGACTTTTTCATGCACCGTTTGCCAGAAACAATTTCCTTCTAAAAGATCTTTAGGAGGACATAAAAAGGCTCATAAGTCAGACCCGCAGAACAACAACAAGGGGAATGAAGTTGTACAATCTGAACAATATCAACCTTCATCCTCTAAGATGCCAAGAGGACACCAAATGTGTCATAAGCGAGAGCGCGAAATACATCGTCAAGAGAACAATAACAACTGCAAGAAGGTGTTGACAATGAAGGGGAATGAAGTTGTCAAATCTGAACAACATCAACCTTCAAATTCCGTGATTCTTGTTCCTATCATTGATCTCACAAATAATGGTTCAATTTGTGGGTGGAAGAAGGTGCAAGAACATGATATTTTTACCCCCTCAAAGACTTTTTCATGCAAAAATTGCAACAGATCATTCTCTTCCGCACGAGCTTTAGGAGGACATGTAAAGATTCATAAGCGCAAACTCAATCCGATAAAATTAGAAGATAGTGTTGGAGAGTCTTCTATAAATGTTGATACGAAGTCAAACTCAATCCTACATAAGTCAACTGTGGTTGCTTTACCCCTAGATGTCCGGTCAACTGCTGCCACATGTGGTGATTATCATGATACCATCAAGGAAGAAGCATTTGAACTTGATTTATCTCTTAAGCTTTGA 792 0.3826 MKGKEVLKYEQHQPSNSKMPLNINHTKNDSICGLRMQKYEFSTPSMTFSCTVCQKQFPSKRSLGGHKKAHKSDPQNNNKGNEVVQSEQYQPSSSKMPRGHQMCHKREREIHRQENNNNCKKVLTMKGNEVVKSEQHQPSNSVILVPIIDLTNNGSICGWKKVQEHDIFTPSKTFSCKNCNRSFSSARALGGHVKIHKRKLNPIKLEDSVGESSINVDTKSNSILHKSTVVALPLDVRSTAATCGDYHDTIKEEAFELDLSLKL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1673g00001 263 Pfam C2H2-type zinc finger 174 198 - -
Trme1673g00001 263 Pfam C2H2-type zinc finger 48 72 - -
Trme1673g00001 263 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Trme1673g00001 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Trme1673g00001 263 SUPERFAMILY beta-beta-alpha zinc fingers 48 196 IPR036236 -
Trme1673g00001 263 Gene3D Classic Zinc Finger 34 99 - -
Trme1673g00001 263 Gene3D Classic Zinc Finger 159 227 - -
Trme1673g00001 263 MobiDBLite consensus disorder prediction 76 97 - -
Trme1673g00001 263 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 24 222 IPR044653 GO:0003700
Trme1673g00001 263 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Trme1673g00001 263 MobiDBLite consensus disorder prediction 1 23 - -
Trme1673g00001 263 SMART c2h2final6 48 70 IPR013087 -
Trme1673g00001 263 SMART c2h2final6 174 196 IPR013087 -
Trme1673g00001 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Trme1673g00001 263 MobiDBLite consensus disorder prediction 60 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1673g00001 Trme-Chr1673 374 1165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1673g00001 166 246 C2H2 Transcription Factor Family AT3G09290 34.091 3.85e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme1673g00001 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1673g00001 - K09228 tpra:123886838 71.2478