Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16737g00001 GTTAGTGGTAGAGGATTCATCGCACGAGACATCACTTTTAAGAACACTGCAGGTCCTGAGAAGCACCAAGCAGTGGCACTAAGATCCGACTCTGACCTCTCTGTATTCTATCGATGTGGAATTTCCGGTTACCAGGACAGCCTCTATACTCACACCATGCGCCAATTCTATAGAGAATGCAAAATAAGTGGCACCGTGGATTTCATCTTTGGAGATGCCACAACTCTTTTCCAAAATTGTCAAATTCTAGTCAAGAAAGGGTTACCAAATCAAAAGAACACCATCACAGCACAAGGAAGAAAAGACCCGAATGAACCAACTGGTTTCTCAATCCAATTTTGTAACATCACTGCAGATTCTGACCTTCTACCTTCTGTTAATTCCACCTGGACATATCTTGGAAGACCGTGGAAACAATATTCGAGAACAATTTTCATGCAATCTCACATAAGTGATGTGTTGAGGCCAGAAGGGTGGCTAGAATGGAATGGAGATTTTGCATTGGATACATTGTACTATGCAGAGTACATGAATTATGGGCCAGGAGCCGGACTAAATAAGCGAGTTAAATGGCCGGGGTATCACATTATGAATGATTCGAGTCAAGCTAGTAACTTCACGGTGACCCAATTTATCGAGGGGAATCTGTGGTTGCCCACAACAGGTGTAGCATTCACCGCTGGACTCGGAGTTTAA 696 0.4339 VSGRGFIARDITFKNTAGPEKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFYRECKISGTVDFIFGDATTLFQNCQILVKKGLPNQKNTITAQGRKDPNEPTGFSIQFCNITADSDLLPSVNSTWTYLGRPWKQYSRTIFMQSHISDVLRPEGWLEWNGDFALDTLYYAEYMNYGPGAGLNKRVKWPGYHIMNDSSQASNFTVTQFIEGNLWLPTTGVAFTAGLGV 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16737g00001 231 Gene3D - 1 231 IPR012334 -
Trme16737g00001 231 ProSitePatterns Pectinesterase signature 2. 62 71 IPR033131 -
Trme16737g00001 231 SUPERFAMILY Pectin lyase-like 1 228 IPR011050 -
Trme16737g00001 231 FunFam Pectinesterase 4 1 229 - -
Trme16737g00001 231 Pfam Pectinesterase 1 215 IPR000070 GO:0030599|GO:0042545
Trme16737g00001 231 PANTHER PECTINESTERASE 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16737g00001 Trme-Chr16737 134 829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16737g00001 1 229 Carbohydrate Esterase AT4G33220 77.729 1.67e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16737g00001 K01051 - gmx:100777500 429.098