Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme167273g00001 ATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGCATGAAGTACCTGAAGGTAACTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGACAACCCAAAACCTGCCTTCCAGACCATCACCTGTTCATATACGAGAAAGTATCGACCTGAACTTGATATCTTCACCTCATACATCTTTTAGTCAAGGGTTCGGCCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTGCCGAAGGAGCTTCTCCAATGTCTGGAGGCGGGGCACCGACCTTATCAGAGAGACGCTGGATACACCGTCAAATTCAGCAGCTACGTTCAATAGATAGAATGACTACTACAACTGGCAGAACTAATGGTGTTCCAGCTACCAATACAATAA 442 0.4434 MLLCDICDSPAHTYCVGLGHEVPEGNWYCDGCRPVALASLNSQAQESDLRATTQNLPSRPSPVHIRESIDLNLISSPHTSFSQGFGHLSSSRFSGRSAEGASPMSGGGAPTLSERRWIHRQIQQLRSIDRMTTTTGRTNGVPATNTI 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme167273g00001 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 45 IPR013083 -
Trme167273g00001 147 PANTHER F18C1.6 PROTEIN 1 144 - -
Trme167273g00001 147 SUPERFAMILY FYVE/PHD zinc finger 1 34 IPR011011 -
Trme167273g00001 147 MobiDBLite consensus disorder prediction 92 111 - -
Trme167273g00001 147 Pfam PHD-finger 1 34 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme167273g00001 Trme-Chr167273 40 481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme167273g00001 1 47 C2H2 Transcription Factor Family AT3G01460 43.750 1.88e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme167273g00001 PHD 2.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme167273g00001 - - vvo:131610541 266.929