Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16719g00001 TTAAAACAAGGACAAGGATTGTGGAGCGATGATAACCGCGGAAAAGGTGTAATAATTGGACTCGTAGACACAGGAATCTACCCTTTTCATCCATCATTCAACGATGAAGGAATGCCGCCACCACCATCAAAATGGAAAGGCCATTGCGAATTCACTGCTGGAACCACATGCAACAATAAGCTCATAGGTGCAAGAAATTTAGTCAAAGGCGCAATTCAAGAGCCTCCATTTGAAGATATCTTCCATGGAACACACACTTCTGCAGAGGCTGCAGGAAGATTCATAGAAGATGCAAGTGTTTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNGCACCACATGCTCACATAGCAATGTACAAAGTTTGTAATGACAAACTAGGATGCCCCGAAAGTGCTATCTTAGCTGCAATGGATATAGCTATTGAAGATGGTGTAGATGTTCTTTCACTTTCCCTTGGTTTAGGGTCTCTTTCATTTTTTGAAGACCCAATTGCAGTTGGTGCATTTGCTGCTACTCAAAATGGTGTTTTTGTTAGTTGCTCTGCTGCAAACTTTGGCCCCGGATACAGCACTCTCTCAAATGAAGCTCCTTGGATCCTCACAGTAGGTGCAAGCACAATTGACAGAAAAATTGTAGCATCAGCAAAACTAGGAAATGGAGATGAATTTGAAGGTGAAACGTTATTCCAGCCCAATGACTTTTCTCAACAATTGTTTCCACTTGTGTATGCAGGTTCATATGGAAACAAGACACAGAATCAATCTTGGTGTCTACCAGGTTCCTTAAAGAACGTTGATCTAAGTGGAAAAATAGTGTTGTGTGACATAGGAGGACATGTTACAGGTGATGTGAAAGGACAAGAAGTTCTAAATGCGAACGGTGTAGGAATGATCCTTGCAAACCCAGAAGCACTCGGTTTCACCACTTATGTTCTTGCGGATGTTTTACCTGCTGTTGAAGTGAGTTATGAAGCTGGTTTAACAATCAAAGATTACATAAACTCAACCTACAATCCAACAGCAACAATACTATTCAAAGGAACAGTGATTGGTGATTCTTTAGCTCCTTCTGTTGCTTCATTTTCTTCAAGAGGACCAAGCAAAGAAAGTCCTGGAATTCTAAAACCAGACATCATAGGACCAGGTGTCAACACTCTAGCTGCTTGGGCTGTTTCTGTAGACAACAAACTCCCGCCTTATAATATTATTTCTGGTACTTCAATGTCTTGTCCTCATCTTAGTGGTATTGCTGCATTGATTAAAAGCTCTCACCCTGATTGGTCGCCGGCCGCCATAAAATCAGCAATCATGACAACTGCTAATACTCTCAACCTTGGTGGGAATCCTATAACAGATCAAAGACATTTACCTGCTGATGTTTTCGCAACTGGTGCAGGACATGTTAATCCTGTTAAAGCAAATGATCCTGGTCTTATTTATGATATTCAA 1452 0.4022 LKQGQGLWSDDNRGKGVIIGLVDTGIYPFHPSFNDEGMPPPPSKWKGHCEFTAGTTCNNKLIGARNLVKGAIQEPPFEDIFHGTHTSAEAAGRFIEDASVXXXXXXXXXXXAPHAHIAMYKVCNDKLGCPESAILAAMDIAIEDGVDVLSLSLGLGSLSFFEDPIAVGAFAATQNGVFVSCSAANFGPGYSTLSNEAPWILTVGASTIDRKIVASAKLGNGDEFEGETLFQPNDFSQQLFPLVYAGSYGNKTQNQSWCLPGSLKNVDLSGKIVLCDIGGHVTGDVKGQEVLNANGVGMILANPEALGFTTYVLADVLPAVEVSYEAGLTIKDYINSTYNPTATILFKGTVIGDSLAPSVASFSSRGPSKESPGILKPDIIGPGVNTLAAWAVSVDNKLPPYNIISGTSMSCPHLSGIAALIKSSHPDWSPAAIKSAIMTTANTLNLGGNPITDQRHLPADVFATGAGHVNPVKANDPGLIYDIQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16719g00001 484 ProSiteProfiles Serine proteases, subtilase domain profile. 1 475 - -
Trme16719g00001 484 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 19 30 IPR023827 -
Trme16719g00001 484 Pfam PA domain 241 329 IPR003137 -
Trme16719g00001 484 Pfam Subtilase family 14 448 IPR000209 GO:0006508|GO:0008236
Trme16719g00001 484 Gene3D - 209 352 - -
Trme16719g00001 484 SUPERFAMILY Subtilisin-like 6 479 IPR036852 GO:0004252|GO:0006508
Trme16719g00001 484 Gene3D Peptidase S8/S53 domain 16 483 IPR036852 GO:0004252|GO:0006508
Trme16719g00001 484 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 6 484 IPR045051 -
Trme16719g00001 484 CDD PA_subtilisin_like 217 344 - -
Trme16719g00001 484 CDD Peptidases_S8_3 4 442 IPR034197 -
Trme16719g00001 484 FunFam subtilisin-like protease SBT1.5 209 351 - -
Trme16719g00001 484 PRINTS Subtilisin serine protease family (S8) signature 405 421 IPR015500 -
Trme16719g00001 484 PRINTS Subtilisin serine protease family (S8) signature 14 33 IPR015500 -
Trme16719g00001 484 PRINTS Subtilisin serine protease family (S8) signature 78 91 IPR015500 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16719g00001 Trme-Chr16719 1 1452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16719g00001 17 483 Subtilisin-like Serine Gene Family AT5G67360 48.676 4.18e-137 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16719g00001 - - gmx:100783595 752.666