Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16715g00001 AGTTCAGAACAACAGCTTTTATTAGACAATTTGTCCGATACTATGCGGCGAATTTGTAAGAGTTTGAGGACAGTTTCAGAAGGCGAATTACGAGGGATAGAAGGTTCTCAAGATGGTTTTCTAAAGGAAAATATCTCAGGGTTTTTTCCAATGTCTAAGGGGAACTCTCAGATAGCATTTAGCACTGGTGATCCTGATTTATTCCAGATGCCATTGATGGCAGCTAACCTAAAAAACAATGGAATCCAAGGTTCACATAGTCAGGTAACAAGTGAATCAAGAAAGCAGGCTGAGAAAAGGAGAAATGCAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTTTGAAGGATGCTGCAAAAAAAATTGGGGTTTGTCCGACAACTCTGAAGAGAATATGCAGGCAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGTTCGTTGAAGAAAATACAAACTGTCCTTGATTCTGTCCAAGGAGTTGAAGGAGTGCTGAAGTTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGATCAATCATCGAGCAAATTGGTACACATAATAAAACTCTCATGTTCCCCGAGAAAAGCTCGGTAGAGAACTCGACCATTAAGTTGGAGGATGATGGTGTTCTCATCTCTAATTCATGTGAGGGTGACTTGAAGAAAGATAATAATGCTTCTTCTGTTGACTATAT 731 0.4008 SSEQQLLLDNLSDTMRRICKSLRTVSEGELRGIEGSQDGFLKENISGFFPMSKGNSQIAFSTGDPDLFQMPLMAANLKNNGIQGSHSQVTSESRKQAEKRRNAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIEQIGTHNKTLMFPEKSSVENSTIKLEDDGVLISNSCEGDLKKDNNASSVDY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16715g00001 243 ProSiteProfiles RWP-RK domain profile. 94 175 IPR003035 -
Trme16715g00001 243 PANTHER PROTEIN NLP8 1 208 IPR045012 GO:0003700
Trme16715g00001 243 MobiDBLite consensus disorder prediction 81 101 - -
Trme16715g00001 243 Pfam RWP-RK domain 107 155 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16715g00001 Trme-Chr16715 65 1452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16715g00001 1 220 NLP Transcription Factor Family AT3G59580 52.632 4.40e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trme16715g00001 RWP-RK 7.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16715g00001 - - gmx:100793770 330.872