Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme166790g00001 ATGGTGGAGAGTACTGTTGCTACTGCTGCTACTGAAATGGCTCTAAGACTCCATTGCAAGCATCGTTGGTGCGTTTCAGGGACCCCAATTCAGCGAAAGCTTGATGACTTATATGGACTTCTAAGATTCATTAAAACTAGYCCCTTCAATATATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTATGAG 192 0.4219 MVESTVATAATEMALRLHCKHRWCVSGTPIQRKLDDLYGLLRFIKTSPFNIYRWWSEVIRDPYE 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme166790g00001 64 Gene3D - 4 64 IPR038718 -
Trme166790g00001 64 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 64 - -
Trme166790g00001 64 Pfam SNF2-related domain 1 62 IPR000330 GO:0005524|GO:0140658
Trme166790g00001 64 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 64 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme166790g00001 Trme-Chr166790 159 350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme166790g00001 5 64 RAD5 or RAD16-like Gene Family AT5G22750 38.095 1.20e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme166790g00001 SNF2_N 2.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme166790g00001 K15710 - zju:107414045 114.775