Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16665g00001 ATGATCAAATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCAAAGCACTTTGGTTTTTTCTTCTACAGGCGCACACCTACAACGATATATGTTCGTGAATCTCATGTTGAGAAGATGGGCAAAGTTCAAGATATATCCTATGAGATTCTCAATGTGCTTGAATTTAATAGTACAAGGAAGCGTCAGTCAGTTGTATGTCGTTATCCAGATGGAAGGCTTGTACTATACTGTAAGGGTGCTGATACTGTAATCTATGAGAGACTGTCTGATTCTAACAACGATATCAAGAAAATCACCAGGGAGTATTTGGAGCAATTTGGATCTTCTGGACTACGTACATTATGCCTGGCTTACAGAGAATTGCATCCAAATGTTTACGAAAGTTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTACAGGATCGTGAAAAGAAATTAGACGAG 459 0.3965 MIKYQAASPDEAALVIAAKHFGFFFYRRTPTTIYVRESHVEKMGKVQDISYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLSDSNNDIKKITREYLEQFGSSGLRTLCLAYRELHPNVYESWNEKFIQAKSSLQDREKKLDE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16665g00001 153 Pfam Cation transport ATPase (P-type) 7 93 - -
Trme16665g00001 153 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 7 129 IPR023299 GO:0000166
Trme16665g00001 153 Gene3D - 2 151 IPR023299 GO:0000166
Trme16665g00001 153 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 153 - -
Trme16665g00001 153 FunFam Phospholipid-transporting ATPase 8 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16665g00001 Trme-Chr16665 30 1129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16665g00001 2 153 Primary Pumps ATPases AT1G59820 80.921 1.23e-86 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16665g00001 K14802 - gmx:100815547 289.271