Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1665g00001 CCTCCTCCTTCCTCTTCTCGTGCCAAAGACTTCTTCCCCTCTCCAGCTCTCTCTCTTAGCCTTGCAGGGATTTTTCGGCATGGTGGATTGGCGGCGGAGGGTGAAGGGGCAAGTACTAGTAACATGGAGGTGGAGGAAGGGGAGGAAGGGAGTACCGTTGGAGGTGATCAACGCGTTGAGGAAATTAGTAGTGAGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAAAGGCAACAACTTAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAATTTTGGTTCCAAAATCGTAGAACCCAAATCAAGGCAATACAAGAGAGACATGAAAATTCATTGTTGAAAACTGAAATAGAGAAATTAAGAGAGAAAAATAAGACCCTAAGAGAGACCATAAACAAAGCTTGTTGCCCCAATTGTGGGGTACCCACTACAAACAAAGATGGTGCCATGCCAACCGAAGAACAACAACTACGTATTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAGCTACGAGCAGCTTTAGGGAAACATGCATCTGGTACAATGTCACCTTCATGTTCTACTAGCCATGACCAAGAAAATATTAAAAGCTCTTTGGATTTTTACACTGGAATTTTTGGTCTTGATGAATCAAGAATAATGGATGTAGTGAACCAAGCAATGGATGAACTTATAAAGATGGCTACAATGGATGAACCATTGTGGCTACGTAGCTTAGAGACTGGTCGTGAAATACTTAATTATGATGAATATATGAAGGAGTTTGTAGTTGAAAATTCAGATAATGGAAGACCAAAGAGATCCATTGAAGCTTCAAGAGATACAGGAGTTGTTTTTGCAGATCTTCCAAGGATTGTCCAATGTTTTCTTGATGCTGTAAGATACAAATTAATGCTTATACATTCTTAA 918 0.4074 PPPSSSRAKDFFPSPALSLSLAGIFRHGGLAAEGEGASTSNMEVEEGEEGSTVGGDQRVEEISSELFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLREKNKTLRETINKACCPNCGVPTTNKDGAMPTEEQQLRIENVKLKAEVEKLRAALGKHASGTMSPSCSTSHDQENIKSSLDFYTGIFGLDESRIMDVVNQAMDELIKMATMDEPLWLRSLETGREILNYDEYMKEFVVENSDNGRPKRSIEASRDTGVVFADLPRIVQCFLDAVRYKLMLIHS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1665g00001 305 PRINTS Lambda-repressor HTH signature 86 102 IPR000047 GO:0003677
Trme1665g00001 305 PRINTS Lambda-repressor HTH signature 77 86 IPR000047 GO:0003677
Trme1665g00001 305 Coils Coil 156 176 - -
Trme1665g00001 305 ProSitePatterns 'Homeobox' domain signature. 81 104 IPR017970 GO:0000981|GO:0006355
Trme1665g00001 305 Gene3D - 62 105 - -
Trme1665g00001 305 Pfam START domain 220 299 IPR002913 GO:0008289
Trme1665g00001 305 SMART HOX_1 57 110 IPR001356 GO:0003677
Trme1665g00001 305 ProSiteProfiles 'Homeobox' domain profile. 67 106 IPR001356 GO:0003677
Trme1665g00001 305 MobiDBLite consensus disorder prediction 32 56 - -
Trme1665g00001 305 ProSiteProfiles START domain profile. 209 257 IPR002913 GO:0008289
Trme1665g00001 305 SUPERFAMILY Homeodomain-like 65 111 IPR009057 -
Trme1665g00001 305 Pfam Homeodomain 65 104 IPR001356 GO:0003677
Trme1665g00001 305 Coils Coil 105 132 - -
Trme1665g00001 305 CDD homeodomain 67 104 IPR001356 GO:0003677
Trme1665g00001 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 301 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1665g00001 Trme-Chr1665 2 2952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1665g00001 66 299 Homeobox Transcription Factor Family AT1G79840 61.017 9.85e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trme1665g00001 START 8.4e-07 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1665g00001 K09338 - gmx:100809926 441.039