Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1664g00001 ATGGGTGGATTCATGTTAGGTTCAAAGAAGAAGAAAAACAATAAGAGTCAAGGCGGTTTTGAAACACTAGGTCTAAATCCAAATGTATTCAGAGGAATCAGACATAAAGGTTACAAAGTTCCGACTCCAATTCAGAGGAAGACGATGCCTCTCATTCTCTCCGGCGTAGATGTCGTTGCTATGGCTCGTACTGGCTCTGGCAAAACGGCGGCGTTTCTTGTTCCCATGCTTCACCGACTTAACCAGCATATTCCTCAGGGTGGCGTTAGAGGACTCATTTTGTCTCCGACTAGGGATTTGGCACTTCAAACTCTTAAGTTTACTCAAGAGCTTGGTCGCTACACAGACCTTCGTGTTAGTTTGTTAGTTGGGGGTGATAGTATGGAAAGTCAATTTGAGGAGTTAGCTCAGAGTCCAGACATTATAATTGCCACTCCCGGTAGGCTAATGCACCATTTGTCTGAGGTTGATGACATGTCCTTGCGTAAGGTGGAGTATGTTGTTTTTGATGAGGCTGATTGTTTATTCGGGATGGGTTTTGCTGAGCAGCTACATCAAATTCTAGCTCAGCTTGGTGAGAACCGTCAGACTTTGCTTTTCAGTGCCACATTACCCAGCGCTCTTGCAGAATTCGCTAAGGCCGGTCTGCGAGACCCTCGCCTTGTTCGCCTCGATTTGGAAACTAAAATTAGCCCTGACTTGAAGCTTGTCTTTTTCACTTTGAGGCAGGAAGAGAAGTATGCTGCTTTGCTCTATTTAATTAGGGAACTTATCGGTTCTGATGAGCAGACTTTAATTTTTGTATCCACTAAACATCATGTTGAGTTTCTCAACTCGTTGTTTCGGCAAGAGGGAATTGAGCCTTCTGTATGTTATGGAGACATGGATCAAGATGCTCGGAAAATCAATGTGGCCAAGTTTAGGTCTAGAAGGACAATGTTGTTGATTGTCACCGACATTGCTGCTCGGGGCATTGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCTTCCAAGCCTAAAATATTTGTTCATCGAGTTGGAAGAGTTGCAAGGGCGGGTCGTACTGGTACTGCTTATTCTTTCTTGACTACCGAGGATATGGCTTACCTCTTGGATCTTCATTTGTTTCTCTCAAAACCAATCAAAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGGATATGGATGGAGTAATGTCAAGAATTGACCAGGCAATGGCAAACAGAGAAACCATTTATGGCCGTTTTCCACAAAAAGTCATTGACCTTGTTTCTGACAGAGTTAGGGAAGTTATTGATACTTCTGCAGAGCTGGAAGCGTTGCAGAGAGCCTGTAAAAATGCATTCCGTTTATATTCTAAAACAAAACCCTTACCCTCAAAGGAGTCCATAAGAAGAGTAAAGGATTTGCCAAAAGAAGGTCTGCATCCTATTTTCAACAAAATGTTGGGAACAGGGGAGTTAACGGCAATTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACAATTTTGGAAGCAGAAGGAGAAGCAGCTAAATCAAGGGTTAGAGCAATATGTTTCTACTTTCAATACACTGTTCATATTTTGTTTGATTATGGTGGTCTAATTTAA 1626 0.425 MGGFMLGSKKKKNNKSQGGFETLGLNPNVFRGIRHKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLVPMLHRLNQHIPQGGVRGLILSPTRDLALQTLKFTQELGRYTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELIGSDEQTLIFVSTKHHVEFLNSLFRQEGIEPSVCYGDMDQDARKINVAKFRSRRTMLLIVTDIAARGIDIPLLDNVINWDFPSKPKIFVHRVGRVARAGRTGTAYSFLTTEDMAYLLDLHLFLSKPIKAAPTEEEVLQDMDGVMSRIDQAMANRETIYGRFPQKVIDLVSDRVREVIDTSAELEALQRACKNAFRLYSKTKPLPSKESIRRVKDLPKEGLHPIFNKMLGTGELTAIAFSEHLKKFRPKQTILEAEGEAAKSRVRAICFYFQYTVHILFDYGGLI 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1664g00001 541 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 485 - -
Trme1664g00001 541 Gene3D - 235 471 IPR027417 -
Trme1664g00001 541 CDD SF2_C_DEAD 244 365 - -
Trme1664g00001 541 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Trme1664g00001 541 MobiDBLite consensus disorder prediction 1 21 - -
Trme1664g00001 541 SMART helicmild6 275 356 IPR001650 -
Trme1664g00001 541 SMART ultradead3 37 237 IPR014001 -
Trme1664g00001 541 CDD DEADc_DDX54 18 223 IPR033517 -
Trme1664g00001 541 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Trme1664g00001 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Trme1664g00001 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Trme1664g00001 541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Trme1664g00001 541 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Trme1664g00001 541 Gene3D - 5 225 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1664g00001 Trme-Chr1664 384 2729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1664g00001 20 389 Eukaryotic Initiation Factors Gene Family AT1G72730 32.527 5.70e-62 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1664g00001 K14808 - gmx:100817417 897.116