Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16647g00001 ATGGAGTCAAGATTTGAGGCATCAAATCATGAAAGTTCATCACAACATCCTCATGATGTTTTTCCCTTATCAGACAACTCAAACCAAACCAAATTTGAAAATCAAGAGGAGGAAGAGGAAAAAATGAGTCATGATGAATATTTTAGAGTGTTAGATGAGCTGAAAANNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTGCCTTGCAACATGCACAACTAGCGATGACGACGATGATGCTTGGAAGAATTCTTTGCCATATGAAGGAGACGAAGAAGGAGGTAATGAAGAACATGGTTTTCTCACATCATGTGTTGGAACTAGATGGTTTAGGGCTCCGGAACTACTATATGGATCAACTAATTATGGTTTAGAGGTTGATCTTTGGTCATTAGGATGTGTTTTTGCCGAGTTGTTAACGTTGAAGCCTTTGTTTCCTGGAACAGGTGATATTGATCAAATTAGTAGAATCATTAGTGTTTTGGGTAATCTTGATGAGGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTATGGAACAATTTCTTTTACTAAGGTGGAAAACCCTATTGGTCTTGAAGCATGCATGCCAAATTGTTTGCATGATGAAGTTTCTTTGGTGAAAAAATTGGTTTGTTATGATCCAGCTAGGAGAGTCACTGCAATGGAGTTACTTCATGACAAGTACTTCTCTGAAGAACCATTTCCAGTTTCTGTTTCTCAACTGCGGGTTCCTCCTATAGCCAGTAATGGACAAGACTAG 792 0.3535 MESRFEASNHESSSQHPHDVFPLSDNSNQTKFENQEEEEEKMSHDEYFRVLDELKXXXXXXXXXXXXXXXXXXXXXCLATCTTSDDDDDAWKNSLPYEGDEEGGNEEHGFLTSCVGTRWFRAPELLYGSTNYGLEVDLWSLGCVFAELLTLKPLFPGTGDIDQISRIISVLGNLDEEAWNGCSKLPDYGTISFTKVENPIGLEACMPNCLHDEVSLVKKLVCYDPARRVTAMELLHDKYFSEEPFPVSVSQLRVPPIASNGQD 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16647g00001 263 Gene3D Transferase(Phosphotransferase) domain 1 88 251 - -
Trme16647g00001 263 SMART serkin_6 5 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16647g00001 263 Pfam Protein kinase domain 108 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16647g00001 263 MobiDBLite consensus disorder prediction 1 42 - -
Trme16647g00001 263 PANTHER CELL DIVISION PROTEIN KINASE 111 246 - -
Trme16647g00001 263 Coils Coil 51 55 - -
Trme16647g00001 263 SUPERFAMILY Protein kinase-like (PK-like) 107 246 IPR011009 -
Trme16647g00001 263 MobiDBLite consensus disorder prediction 14 30 - -
Trme16647g00001 263 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16647g00001 Trme-Chr16647 298 1089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16647g00001 2 259 Core Cell Cycle Gene Families AT4G28980 54.651 5.41e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Trme16647g00001 Pkinase 2.5e-21 CL0016