Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16637g00001 ATGCTTGTAAGAATCAACACTCTTCTTCAAGGGTATTCCGGAATTAGATTTGAAATTTTGGAAGCTATCACTAAGCTCCTAAACAACAACATTACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCAGGTGATCTTGTTCCACTTTCATACATTGCTGGTTTGTTAACCGGAAGACCCAACTCCAAAGCCGTTGGACCCTCGGGAGAAATTCTCAATGCCAAAGAAGCTTTTCAACTCGCAGGCATTGGTTCTGAGTTTTTCGAATTGCAACCAAAAGAAGGTCTTGCTCTTGTTAATGGTACCGCCGTTGGTTCTGGTTTAGCTTCTATTGTTCTATTTGAAGCAAATGTACTAGCAGTTTTGTCTGAAGTTATGTCAGCAATTTTTGCTGAAGTTATGCAAGGGAAGCCAGAATTCACTGATCATTTGACTCATAAGTTGAAGCATCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAACATATTTTGGATGGAAGCGCTTATGTTAAAGCAGCTAAGAAGTTACACGAAACTGATCCTTTACAAAAGCCTAAACAGGATCGTTATGCACTTAGAACTTCACCTCAATGGCTTGGTCCTTTGATTGAAGTGATAAGATTTTCAACCAAGTCAATTGAGAGAGAAATTAACTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCATTCATGGTGGTAACTTTCAAGGAACACCTATTGGAGTTTCAATGGATAACACACGTTTAGCTCTTGCTTCAATTGGTAAACTCATGTTTGCTCAATTCTCTGAACTTGTTAATGATTTTTACAACAATGGGTTGCCTTCGAATCTCACTGCTAGTAGGAACCCAAGTTTGGACTACGGTTTCAAGGGATCTGAAATTGCCATGGCTTCTTATTGCTCTGAGTTACAATATCTTGCTAATCCTGTCACCACCCATGTCCAAAGTGCCGAGCAACACAACCAAGATGTTAACTCTTTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCTATGTCAAGCAATCGACTTGAGGCATTTGGAGGAGAATTTGAGAAACACCGTCAAGAACACTGTAAGCCAAGTAGCTAAGAGAACACTCACCACCGGTGTCAACGGAGAACTTCATCCTTCTAGATTTTGTGAGAAAGATTTGCTCAAAGTTGTTGATAGAGAGTATGTATTTGCCTATGCTGATGATCCTTGTCTAGCTACATACCCTTTGATGCAAAAGTTGAGACAAGTGCTTGTGGATCATGCATTGGTAAATGTTGATGGAGAGAAGAATTTGAACACATCAATCTTCCAAAAGATTGCAACTTTTGAAGA 1394 0.3773 MLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFQLAGIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSXXXXXXXXXXXXXXXXXXXXXXXXXXLCQAIDLRHLEENLRNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYADDPCLATYPLMQKLRQVLVDHALVNVDGEKNLNTSIFQKIATFE 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16637g00001 464 Coils Coil 321 333 - -
Trme16637g00001 464 PANTHER HISTIDINE AMMONIA-LYASE 1 464 IPR001106 -
Trme16637g00001 464 Gene3D - 1 103 IPR024083 -
Trme16637g00001 464 FunFam Phenylalanine ammonia-lyase 370 464 - -
Trme16637g00001 464 Gene3D - 370 464 IPR023144 -
Trme16637g00001 464 Pfam Aromatic amino acid lyase 1 378 IPR001106 -
Trme16637g00001 464 CDD PAL-HAL 1 333 IPR001106 -
Trme16637g00001 464 SUPERFAMILY L-aspartase-like 1 464 IPR008948 GO:0003824
Trme16637g00001 464 NCBIfam phenylalanine ammonia-lyase 1 463 IPR005922 GO:0005737|GO:0006559|GO:0016841
Trme16637g00001 464 Gene3D Fumarase/aspartase (Central domain) 104 369 - -
Trme16637g00001 464 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 39 55 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16637g00001 Trme-Chr16637 1 1394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16637g00001 1 464 Monolignol Biosynthesis Gene Families AT2G37040 82.543 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16637g00001 K10775 - gmx:100302735 815.839