Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16635g00001 ATGGGTTTTCGCATAACAAGTATTATCAAAAGGGCATCATTTTCCACAACACAAGCATCTACCAAGGGATTTGAAGTTCCAAAAGGCTATCTCACCGTCTATGTTGGAGATAGAATGAAGCGGTTCGTGATTCCAGTATCGTACTTGAACCAACCACTGTTTCAAGAATTATTACATCAAGCAGAAGAAGAGTTTGGATATGATCATCCAATGGGTGGTCTCACAATTCCGAGCAACGAGGATGAATTCCTAAACCTCACTTCTCACTTGAGTGAGTTGTAG 282 0.4078 MGFRITSIIKRASFSTTQASTKGFEVPKGYLTVYVGDRMKRFVIPVSYLNQPLFQELLHQAEEEFGYDHPMGGLTIPSNEDEFLNLTSHLSEL 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16635g00001 93 Pfam Auxin responsive protein 11 88 IPR003676 GO:0009733
Trme16635g00001 93 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 90 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16635g00001 Trme-Chr16635 116 397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16635g00001 15 83 Calmodulin-binding Proteins AT3G43120 49.275 2.47e-18 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16635g00001 - K14488 gmx:100789280 157.147