Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme166323g00001 GAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAAAAGTTTGAGAATTTGTACAAGTATTACAAGAAAACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAACACTATAGATTCTTCAGACAGCTTGAAGCAATATGTGGAGAAGCCTCAACTTCAGACAAAACTACACCTCATGTTGATGCTGTTGTTGCTACTCAAACTCCAAACTTCACAATCAACCAAGAAAATATTAATGGTGTAATTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTAAGTTTCTCGAATTCATCTGAATTCGAGACATCTTCATCTGAAAACAACGACGAGGATCTCTCGGCCATTGCACACACGATGAAGACGTCAAAGCAGAAAGGGGTGGATAAAAGTGATAGGAGGGGGAGGAAAAGTTGGAGAGGTAAAGTGGAGGAGATTGTTGATTCTCATATGAAGAAGATTATAGAGACTCAAGATGCTTGGATGGA 506 0.3557 EEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEASTSDKTTPHVDAVVATQTPNFTINQENINGVIXXXXXXXXXXXXXXXSFSNSSEFETSSSENNDEDLSAIAHTMKTSKQKGVDKSDRRGRKSWRGKVEEIVDSHMKKIIETQDAWM 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme166323g00001 168 Gene3D - 1 25 - -
Trme166323g00001 168 PANTHER FI21293P1 1 167 - -
Trme166323g00001 168 Pfam Myb/SANT-like DNA-binding domain 2 48 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme166323g00001 Trme-Chr166323 1 506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme166323g00001 1 168 Trihelix Transcription Factor Family AT5G03680 44.318 2.60e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trme166323g00001 Myb_DNA-bind_4 5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme166323g00001 - - gmx:100787750 192.586