Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16628g00001 ATGAAGAAGAATGCAGCCATGAACCATGTTACTGCCCCTTTTCAGTCTAGTGATGAAACCATTGTTCTTCGAGAGGAAAATGATGGCAAAATATTTATTCTTAATAATAGTACTATGATTTTGGGAAATGCAGTCAACATTTGCTGCATTGGTCCTAACTCTTCTGAGTCCGAGTATAGTTATGATATATTGGCTAGGTCTCAGACATGCAAACTGAAATTGCATTCTTTTGTGAAGAACGTCCAACGGGTTACTTTAGCAACTCTTTCATCTGAATTCCTTGTGATTCCAGTTGGTTCTTCAGAACTTCTCAAGCTAGAAATTTGCATAACCCCAATGATGCAAATTTACATATTAGACCTGACCGGAAAGAGGATCCCCCTGAGGGTTAATAGTTCAGACAGGATGTTCAGTGTGAAGGAGAAGATTCTTGACATGGAAGGGATCCCAATGCACCAGCAACGTCTGATCTTTGACGGTAAGCAACTAGAGGACAACATGACCATTGCCGATTACAACATCGAAGAGAAGTCAGCCCTCCACCTCGTCCTCCGCCTCACTG 562 0.4181 MKKNAAMNHVTAPFQSSDETIVLREENDGKIFILNNSTMILGNAVNICCIGPNSSESEYSYDILARSQTCKLKLHSFVKNVQRVTLATLSSEFLVIPVGSSELLKLEICITPMMQIYILDLTGKRIPLRVNSSDRMFSVKEKILDMEGIPMHQQRLIFDGKQLEDNMTIADYNIEEKSALHLVLRLT 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16628g00001 187 PANTHER UBIQUITIN 114 186 - -
Trme16628g00001 187 SUPERFAMILY Ubiquitin-like 98 186 IPR029071 -
Trme16628g00001 187 ProSiteProfiles Ubiquitin domain profile. 114 187 IPR000626 GO:0005515
Trme16628g00001 187 Pfam Ubiquitin family 121 186 IPR000626 GO:0005515
Trme16628g00001 187 PRINTS Ubiquitin signature 145 165 IPR019956 -
Trme16628g00001 187 PRINTS Ubiquitin signature 166 187 IPR019956 -
Trme16628g00001 187 PRINTS Ubiquitin signature 124 144 IPR019956 -
Trme16628g00001 187 Gene3D - 110 187 - -
Trme16628g00001 187 SMART ubq_7 114 185 IPR000626 GO:0005515
Trme16628g00001 187 FunFam Polyubiquitin 5 114 187 - -
Trme16628g00001 187 ProSitePatterns Ubiquitin domain signature. 140 165 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16628g00001 Trme-Chr16628 630 1388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16628g00001 114 186 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 65.753 8.40e-26 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16628g00001 - K08770 mtr:11432566 204.142