Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16627g00001 ATGGAGCAAGAAAAGGTTTGTGAGTATGCTGAAGACGTTGGTGGAAAAACTGATTTTTTGGATGACGAAACAGAGGCTCCAGATGACAAGTGTGAATATGAGTTGGGAGTGGCTCCTGACGAAGAATTGGTTCATCTTTCAAAGAAATTAGACACCTCAGCAGAAGAGAAGTTAGATGCAGTTGACCATGATAAAAAATGTGAAGCAATGCTTCCTAAAAAGGTCAGTAATAAAACTGAAAAACAGAAGCTACCTTCACTGTTAGACTCAACCTCAAAGTTAAAAGTAAAGCATCAAGCTACAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGTTGCAAAGAAATTAGCGAAATCTGAAGAGGCAGCAGTATCTGGGGAGAAGATTCCTAATGAGACAAAGGATGAGGCAGAAATAAAAATCCTGAAAGAAATGTCTGTACATTCTGATATAAGTGAGAACTCAAATGTACCAAGAAATAAGCCAGATAATTTTGTTGAAGAGGAGAAGGAGAATAGACCAAATGATAGAGAACATGGTTTAGTGGATAGAACAAGTGTTGGAAATCAAACTACTAAATCTAGTGTTAAGCCAGCAAATATCATCAAATCTAAGAAAATGAAGCACAATTCATCTATATCTGAATTTAAAGCAAGAGCAAAAACTGAAGCCACATGTTTTATATTAAGTGGGCATCGCTTCCAGAGAAAGGAGTATCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGACCCTATAAGGAGGACAGAGAAATTTTTTGCTGCTAGTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGTAGTCAGGCAGGAAAATTATTGCCCGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGCGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGTATTGTTGTATATGGCGATTGTTTTGCTCCACCTTTGGATACTCTGAAGCGTGCGGTCAAAGCTGGAGATGGAACAATATTAGCGACGTCCCCTCC 1130 0.4035 MEQEKVCEYAEDVGGKTDFLDDETEAPDDKCEYELGVAPDEELVHLSKKLDTSAEEKLDAVDHDKKCEAMLPKKVSNKTEKQKLPSLLDSTSKLKVKHQATKRPASKTKKTTVAKKLAKSEEAAVSGEKIPNETKDEAEIKILKEMSVHSDISENSNVPRNKPDNFVEEEKENRPNDREHGLVDRTSVGNQTTKSSVKPANIIKSKKMKHNSSISEFKARAKTEATCFILSGHRFQRKEYQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAASASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRAVKAGDGTILATSPP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16627g00001 377 MobiDBLite consensus disorder prediction 97 113 - -
Trme16627g00001 377 Gene3D BRCT domain 219 336 IPR036420 -
Trme16627g00001 377 MobiDBLite consensus disorder prediction 73 136 - -
Trme16627g00001 377 Pfam BRCA1 C Terminus (BRCT) domain 230 295 IPR001357 -
Trme16627g00001 377 SUPERFAMILY BRCT domain 227 314 IPR036420 -
Trme16627g00001 377 MobiDBLite consensus disorder prediction 114 136 - -
Trme16627g00001 377 ProSiteProfiles BRCT domain profile. 225 310 IPR001357 -
Trme16627g00001 377 MobiDBLite consensus disorder prediction 163 184 - -
Trme16627g00001 377 CDD BRCT_TopBP1_rpt7 227 300 - -
Trme16627g00001 377 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 53 377 IPR044254 -
Trme16627g00001 377 MobiDBLite consensus disorder prediction 150 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16627g00001 Trme-Chr16627 1 1429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16627g00001 228 377 Core DNA Replication Machinery Family AT4G02110 77.333 6.73e-81 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16627g00001 K10728 - gmx:100799144 485.723