Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16621g00001 ATGGCAAGAGGTTATTGCCTATTACCTAGTGCTCCTGAAATGTATCACAGTGAGACAAAAGTTGGACATATTAGTAATCATGAATCATATCATATAGTTGAAAAATTCAAAAATTCTGTTTGCTCAGTGTGTGAGAACAAAAGGCCTAAATTTGAATTGATGAAAGAATACACATATGTCGAGCTACATGAAGCAACGCATGGTTTTTCGCCGAAGAATTATTTATCGGAAGGTGGATTTGGTTCTGTTTATTGGGGAAAGCTACACGGATTAAAGATTGCGGTTAAGAAACATAAGTTTGCAAGTCTTCAAGGAGAGAAGGAATTCAAATCTGAAGTTAATGCACTGAGCAAAGCGATACATGAAAATGTGGTCATGCTGTTAGGATCTTGTTCCGAGGGAAATAACAGATTTCTTGTATATGAATTTGTTTGTGATGGCTCACTTGATCAGCATTTATCGCAACATTCTAGAAAACCTCTTGATTGGCCAGCCAGGATCAAAGTGGCTATTCGAGCTGCAAAAGGCTTGTTGTATTTGCATGAGAATAATATAATACATAGAGATGTGAGACCAAGTAACATCCTTGTTACACATGATTATGAAGCAATG 612 0.3676 MARGYCLLPSAPEMYHSETKVGHISNHESYHIVEKFKNSVCSVCENKRPKFELMKEYTYVELHEATHGFSPKNYLSEGGFGSVYWGKLHGLKIAVKKHKFASLQGEKEFKSEVNALSKAIHENVVMLLGSCSEGNNRFLVYEFVCDGSLDQHLSQHSRKPLDWPARIKVAIRAAKGLLYLHENNIIHRDVRPSNILVTHDYEAM 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16621g00001 204 Pfam Protein tyrosine and serine/threonine kinase 73 200 IPR001245 GO:0004672|GO:0006468
Trme16621g00001 204 ProSitePatterns Tyrosine protein kinases specific active-site signature. 185 197 IPR008266 GO:0004672|GO:0006468
Trme16621g00001 204 SMART tyrkin_6 69 204 IPR020635 GO:0004713|GO:0006468
Trme16621g00001 204 SUPERFAMILY Protein kinase-like (PK-like) 49 202 IPR011009 -
Trme16621g00001 204 Gene3D Phosphorylase Kinase; domain 1 40 143 - -
Trme16621g00001 204 PANTHER OS01G0750732 PROTEIN 36 203 - -
Trme16621g00001 204 FunFam Proline-rich receptor-like protein kinase PERK8 31 143 - -
Trme16621g00001 204 ProSiteProfiles Protein kinase domain profile. 69 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16621g00001 204 Gene3D Transferase(Phosphotransferase) domain 1 145 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16621g00001 Trme-Chr16621 99 1008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16621g00001 57 203 Trihelix Transcription Factor Family AT4G32710 47.020 2.37e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trme16621g00001 PK_Tyr_Ser-Thr 3.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16621g00001 - - lsv:128129542 357.836