Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16616g00001 ATGGACAAAACAAGATATGAAAAAGCAATTAAAGCTTGTGACTTAGATAAGGATATCAATGATTTTAGTCATGGTGATCTTACAGAAATAGGTCAGAGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATATATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATACAGCTTCAATACTATTCAATTTCTGGAATATCGCAGGCCTGCAGACGCGTATCACTCAGTTCGGTTCAGCAGCAGAATTGGTTTTTGATATATGCAGAAGGAAGGATCAGGCTGTAGCAGGCCGGCCAGCTGTTGTCCTATGGAATATTTGGCATAATTGGAATGAGATGGTGTGGAATAATATTAG 398 0.3995 MDKTRYEKAIKACDLDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNFWNIAGLQTRITQFGSAAELVFDICRRKDQAVAGRPAVVLWNIWHNWNEMVWNNI 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16616g00001 132 Pfam ABC transporter 27 64 IPR003439 GO:0005524
Trme16616g00001 132 FunFam Multidrug resistance associated protein, putative 1 69 - -
Trme16616g00001 132 Gene3D - 1 99 IPR027417 -
Trme16616g00001 132 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 88 - -
Trme16616g00001 132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 79 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16616g00001 Trme-Chr16616 19 1056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16616g00001 2 75 Calmodulin-binding Proteins AT2G36910 36.486 1.08e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16616g00001 - - vvo:131595584 154.066