Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme166131g00001 CTCGAGGTCGAGAGCAGTGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCCCGGATCAGCAGCGATTGATTTTCGCCGGTAAGCAACTTGAAGATGGACGCACTTTGGCTGATTACAATATCCAGAAGGAATCAACTCTTCATCTTGTTCTCAGGCTTCGTGGTGGAATCATTGAACCTTCTTTGATGGCTTTGGCTCGCAAATACAACCAAGACAAAACCATTTGCCGCAATGCAATTGAGGTTATAATTGTTCCCTAA 279 0.4409 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRNAIEVIIVP 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme166131g00001 92 FunFam Ubiquitin-60S ribosomal protein 1 63 - -
Trme166131g00001 92 SUPERFAMILY Ubiquitin-like 1 62 IPR029071 -
Trme166131g00001 92 Pfam Ribosomal L40e family 64 84 IPR001975 GO:0003735|GO:0005840|GO:0006412
Trme166131g00001 92 Pfam Ubiquitin family 1 60 IPR000626 GO:0005515
Trme166131g00001 92 ProSiteProfiles Ubiquitin domain profile. 1 62 IPR000626 GO:0005515
Trme166131g00001 92 PANTHER UBIQUITIN 1 76 - -
Trme166131g00001 92 SMART ubq_7 1 58 IPR000626 GO:0005515
Trme166131g00001 92 ProSitePatterns Ubiquitin domain signature. 13 38 IPR019954 -
Trme166131g00001 92 Gene3D - 63 87 IPR038587 -
Trme166131g00001 92 Gene3D - 1 62 - -
Trme166131g00001 92 PRINTS Ubiquitin signature 18 38 IPR019956 -
Trme166131g00001 92 PRINTS Ubiquitin signature 39 60 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme166131g00001 Trme-Chr166131 1 480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme166131g00001 1 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 95.294 6.39e-56 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme166131g00001 K02927 - zju:107432081 165.622