Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme165746g00001 ATGTGGGGATTCAACGATGACGTGGATGTACCCTCTGTAATAGAAGAACAACAACCTCTCTTGCTCATGCCACCCCCAATTAATCATAGCTTTGATAATGAGAATACCATTAAGTGTAAGATATGCTCCATGCAATTTCCTGACGACCAAGCACTCGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAATGGCTGTTTAGAGGCTATGCGTGCGCCATTTGTCTGGATTCTTTTACTAACAAGAAACTACTGGAAACTCATGTTCAAGAGAGACATCATGTGCAGTTTGTTGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGGAGTCATTTTGGACATA 349 0.4183 MWGFNDDVDVPSVIEEQQPLLLMPPPINHSFDNENTIKCKICSMQFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGH 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme165746g00001 116 Gene3D Classic Zinc Finger 26 97 - -
Trme165746g00001 116 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 94 IPR013087 -
Trme165746g00001 116 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 115 - -
Trme165746g00001 116 Pfam Zinc finger C2H2-type, 3 repeats 73 115 IPR040689 -
Trme165746g00001 116 ProSitePatterns Zinc finger C2H2 type domain signature. 39 60 IPR013087 -
Trme165746g00001 116 SMART c2h2final6 71 94 IPR013087 -
Trme165746g00001 116 SMART c2h2final6 37 60 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme165746g00001 51 115 C2H2 Transcription Factor Family AT2G23740 69.231 3.30e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme165746g00001 zf-C2H2_3rep 7.2e-27 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme165746g00001 - - gmx:100786757 208.379