Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme165526g00001 GTGAACCGGTCTAAGAAAGGGTTGAGTCCCGGTTTAATTATTATTATAACTGTGGCTGATGCTGCTGGTGTGGCTTTGATTGGGCTTGTTGTTGTGTATGTGTATTGGAAGAAGAAAGATAAGTCTAATGGGTGTAGTTGTACTTTGAAGAGGAAATTTGGTGGTAGTGGAAACAATGAAAGATCACATTTGTGTTGTTTTTGTTGGTCTTTAGGGTGTGTTAAAGGGTTTAAGAGTGATGATTCTGAAATGGAAGAGAGTGAGAAAGGAGGAGGAGGTGGTGGTGGTNNNNNNNGTGGGAGAGGGGAAAGTGAAGGTGAAGGTGAATTGGTGGCAATTGATAAAGGTTTTAGCTTTGAACTTGATGAGTTGTTAAGAGCTTCTGCATATGTGTTAGGGAAAAGTGGGTTAGGGATTGTGTATAAGGTTGTGCTTGGGAATGGTGTACCTGTGGCTGTGAGGAGATTAGGGGAAGGTGGTGAACAAAGGTATAAGGAATTTGCTGCTGA 509 0.4145 VNRSKKGLSPGLIIIITVADAAGVALIGLVVVYVYWKKKDKSNGCSCTLKRKFGGSGNNERSHLCCFCWSLGCVKGFKSDDSEMEESEKGGGGGGGXXXGRGESEGEGELVAIDKGFSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme165526g00001 169 PANTHER OS05G0588300 PROTEIN 3 168 - -
Trme165526g00001 169 Pfam DNA binding protein S1FA 4 39 IPR006779 GO:0003677|GO:0005634|GO:0006355
Trme165526g00001 169 MobiDBLite consensus disorder prediction 84 104 - -
Trme165526g00001 169 Gene3D Phosphorylase Kinase; domain 1 108 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme165526g00001 Trme-Chr165526 1 509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme165526g00001 4 169 Receptor kinase-like Gene Family AT1G67510 67.066 1.61e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Trme165526g00001 S1FA 0.00024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme165526g00001 - - qsa:O6P43_030584 205.297