Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16548g00001 ATGGCCATGGATAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCACTGTATGCTGATGTCATTAGTCCCACGCAGATTAGGGATGGTTTTTTTATGCTTCTTGAGTCTGCTGATGATCTTGCAGTGGATATCCTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCAGAATCTTCCAAGGGATTTCAGGTAATCCAGACTGCCGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTTGAAAGACGATGGGGTGGTAGCACTCACATTACTGTCGAAGAAGTCAAGAAAAAGATTGCTGATTTACTTAGAGAATATGTGGATAGCGGTGAGACACTTGAAGCCTGTAGGTGTATACGTGAGTTGGGAGTAGCATTCTTCCATCATGAGGTTGTGAAGAAGGCCCTGGTACTTGCTATGGAGATTCCTTCGGCAGAACCTCTACTGTTGAAGCTATTAAAAGAAGCTGCAGAAGAAGGACTGATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAAGGCCTAGATGATCTTGCTCTTGATATTCCGTCAGCTAAAGCCTTGTTTCAGTCATTTGTCCCCAAGGCAATCTCTGAAGGATGGCTTGATGCTTCCTTTGCCAATCCAGCTGGTGAAGATGGGGAATTCCAAGTTGAAGATGAGAAGGTGAGNNNNNNNNNNANNNNNGCTGTATCTATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATTCGAAGTCTAGAAGATCTTGGAGCACCCGAGTATAACTCAATATTTTTGAAGAGGCTAATAACACTTGCTTTGGACAGAAAGAACAGAGAAAAGGAAATGGCATCTGTCCTGCTATCTGCACTTCATATAGAGATATTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAATGCAGAAGATACAACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNTTGGATGAAATTGGCAGCAGGCTACCACCAAAATGCAGTGGTAGTGAAACTGTGCGTATGGCTCGAACACTCTCATCTGCTCGTCATGCAGGTGAAAGGCTATTGAGATGCTGGGGCGGGGGAACTGGATGGGCTGTGGAGGATGCTAAGGACAAGATCACAAAGCTCTTGGAGGAGTACGAAAGTGGTGGGGTTGTCAGTGAAGCATGCCATTGCATTCGGGACTTGGGGATGCCTTTCTTTAACCACGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGTT 1412 0.4171 MAMDRHDKEKEMASVLLSALYADVISPTQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGETLEACRCIRELGVAFFHHEVVKKALVLAMEIPSAEPLLLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFQSFVPKAISEGWLDASFANPAGEDGEFQVEDEKVXXXXXXAVSIIHEYFLSDDIPELIRSLEDLGAPEYNSIFLKRLITLALDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLENAEDTTXXXXXXXXXXXXXXXXXXXXXXXXXXXLDEIGSRLPPKCSGSETVRMARTLSSARHAGERLLRCWGGGTGWAVEDAKDKITKLLEEYESGGVVSEACHCIRDLGMPFFNHEVVKKALVMAMEKKNDR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16548g00001 470 SUPERFAMILY ARM repeat 260 411 IPR016024 -
Trme16548g00001 470 Gene3D - 1 98 - -
Trme16548g00001 470 Gene3D - 254 344 - -
Trme16548g00001 470 ProSiteProfiles MI domain profile. 1 78 IPR003891 -
Trme16548g00001 470 PANTHER PROGRAMMED CELL DEATH 4 1 470 IPR039778 GO:0045892
Trme16548g00001 470 Pfam MA3 domain 1 69 IPR003891 -
Trme16548g00001 470 Pfam MA3 domain 420 468 IPR003891 -
Trme16548g00001 470 Pfam MA3 domain 122 233 IPR003891 -
Trme16548g00001 470 Pfam MA3 domain 261 342 IPR003891 -
Trme16548g00001 470 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Trme16548g00001 470 ProSiteProfiles MI domain profile. 418 470 IPR003891 -
Trme16548g00001 470 SUPERFAMILY ARM repeat 415 469 IPR016024 -
Trme16548g00001 470 SMART ma3_7 122 233 IPR003891 -
Trme16548g00001 470 SMART ma3_7 1 69 IPR003891 -
Trme16548g00001 470 SMART ma3_7 256 437 IPR003891 -
Trme16548g00001 470 Coils Coil 336 343 - -
Trme16548g00001 470 ProSiteProfiles MI domain profile. 255 394 IPR003891 -
Trme16548g00001 470 SUPERFAMILY ARM repeat 1 115 IPR016024 -
Trme16548g00001 470 SUPERFAMILY ARM repeat 118 239 IPR016024 -
Trme16548g00001 470 Gene3D - 108 240 - -
Trme16548g00001 470 Gene3D - 406 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16548g00001 Trme-Chr16548 46 1457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16548g00001 107 233 Eukaryotic Initiation Factors Gene Family AT5G57870 31.008 1.02e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16548g00001 - - gmx:100809081 741.88