Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme165463g00001 ATGGATCATCAAGGAAACAACCAGAATCCGCAAAAGGGGGTTGTCGGTAGCGGAGGTCAGATGCCGTACGGATCTAACCCATATCAGTCAAACCCACTTCAGCAACAGCTGCAAGCCTTTTGGGAAAATCAAATCCAAGAAATCGAAAATGTCACTGATATCAAGAACCACAGCCTTCCCCTGGCAAGGATTAAAAAGATTATGAAGGCTGACGAGGATGTTAAAATGATATCTGCTGAGGCGCCGGTCTTATTTGCAAAGGCCTGCGAGCTGTTCATATCGGAGTTAACTCTGCGTTCTTGGAACCACACTGAAGAGAACAAAAGGAGGA 331 0.4592 MDHQGNNQNPQKGVVGSGGQMPYGSNPYQSNPLQQQLQAFWENQIQEIENVTDIKNHSLPLARIKKIMKADEDVKMISAEAPVLFAKACELFISELTLRSWNHTEENKRR 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme165463g00001 110 MobiDBLite consensus disorder prediction 1 15 - -
Trme165463g00001 110 Gene3D Histone, subunit A 25 110 IPR009072 GO:0046982
Trme165463g00001 110 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 29 110 - -
Trme165463g00001 110 FunFam Nuclear transcription factor Y subunit C 25 110 - -
Trme165463g00001 110 SUPERFAMILY Histone-fold 30 110 IPR009072 GO:0046982
Trme165463g00001 110 MobiDBLite consensus disorder prediction 1 30 - -
Trme165463g00001 110 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 110 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme165463g00001 Trme-Chr165463 179 509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme165463g00001 16 110 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.317 7.14e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trme165463g00001 CBFD_NFYB_HMF 9.5e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme165463g00001 K08066 - gmx:100527803 171.014