Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme165350g00001 CTTTTACTTCATTATAGTATCAATGATAGAAAGGGGATCCTTTCAGATAAGTATGTTATGCTTTCTGCAAAATGTCGGGCTTTAGCAGAACTTCTTCCGTCACTAAAGAAGAGTGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGATATATTGGAGTGGGCTTTGGATGTCATTGGGTTGACCTACAAGCGGCTTGATGGAAGGTAA 219 0.3973 LLLHYSINDRKGILSDKYVMLSAKCRALAELLPSLKKSGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGR 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme165350g00001 72 CDD SF2_C_SNF 14 72 - -
Trme165350g00001 72 Gene3D - 3 72 IPR027417 -
Trme165350g00001 72 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 71 IPR027417 -
Trme165350g00001 72 PANTHER SNF2/RAD54 HELICASE FAMILY 10 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme165350g00001 Trme-Chr165350 83 402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme165350g00001 22 71 RAD5 or RAD16-like Gene Family AT5G22750 44.000 3.07e-08 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme165350g00001 K14439 - gmx:100806323 132.109