Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme165095g00001 ATGGAGAAAAAGATAGTAGTGAAGTACAAAGAGTGTCTTAAGAACCATGCAGCTTCAATTGGTGGCAATGCTACTGATGGATGTGGTGAGTTCATGTCAAGTGGAGAAAATGATACACTTGAAGCTCTCAAATGCTGTGTTTGCAATTGCCACAGAAATTTCCACAGAAAAGAAATAGAATCTGATTATTCTCAACATTATGCAATTTCACTTATTCCTGATCATAACATTAATGCACCCTTCTTGGCTCATTTATCTCCAAACAACAAAAGTGGCTCAACTAGTCCTTCTGATCAGTCTTATTATGAGAAAGATTGTATTAAGGACGATGAAAATCGAACCGAAAAGATGATAAAGAAGAG 362 0.3619 MEKKIVVKYKECLKNHAASIGGNATDGCGEFMSSGENDTLEALKCCVCNCHRNFHRKEIESDYSQHYAISLIPDHNINAPFLAHLSPNNKSGSTSPSDQSYYEKDCIKDDENRTEKMIKK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme165095g00001 120 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Trme165095g00001 120 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 100 - -
Trme165095g00001 120 MobiDBLite consensus disorder prediction 83 120 - -
Trme165095g00001 120 MobiDBLite consensus disorder prediction 102 120 - -
Trme165095g00001 120 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 8 59 IPR006456 -
Trme165095g00001 120 MobiDBLite consensus disorder prediction 83 101 - -
Trme165095g00001 120 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme165095g00001 Trme-Chr165095 29 390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme165095g00001 2 87 ZF-HD Transcription Factor Family AT2G02540 55.814 4.25e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trme165095g00001 ZF-HD_dimer 6.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme165095g00001 - - gmx:100793926 150.214