Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1648g00001 GTTAAGTTATTCTTATCAGAAGAATCTCCTTCACAAGTTGGGTTGAATTCTCAAGATCACCTCCAAGCAAAGATATCGTCCTTGTTGCATCAAGGAGAAGCTAGTTCTGATGATATTTTGCCTCCTGGATTTGAGGGAACTCATGCTTCAAGTCAGTTTGACATTAAGCCATCCCAAATACCAGTTATTAACTGGATTAATCCACCTAAGATCGTGCTAGATCTCACATGGCAAGTGGTGGCTGGGGAAGAAAGCAAAGAGATAGTTGATCAACATCAGAGGGAGATGAGAGTCCTTGAAGCTATTTATCCACGAATATCTTCCATTCCTCCAAATCCTGCTGTTCCAGTGAACGTCGAAGATTCCCATTACATTGATGATCATACTGTTGTAATCCCAATTACGCCTGTTGAAGACGGGGATGTGGCAGCAGATACATTATCTCCTGGTATATTAGATGGTTCACACTCTGCTACGAGTATGTCAATGGCGTCTGATGTAGCTGCTGCATCTGTTGCTTTAACTAGCTTAGTGAAGAACAGTGAACATGGTAATTTGATTGACCGTGAATTACTCAATAATATTCTCAACAATCCTGAAGTGATTGAAAAGTTGGTTAGAGATTATGGAGCTCAAAATAATGCACAGTATGTACAAAACATGGGATCATCTTCAGGAGTTTATTCATATGCTCCTAATCGTGTTAATCAAGTTGAAACCACTACAACCTCATCAAACGCTTTTTCATCCACTTCTTCCTATACTCACACAACTGGAGGTCAGATGGCGCCAACTATTTCTACCCAATGGCATCCTAGGCCTGTAATGAGTTCGGCTATTGCTGCTACTTCTGTTGAGGCCCCTTCAACAAAAGATGTAAACTACTATAAGAGCTTGATTCAACAACATGGAGGAGATAAACAAGAAGCACTTCCATACTCCTCGAATAATCGTCAGAACCAGCAACCATTATCAAACTATGATACAGTACACAATTTTAGAGCAAAAGGGTCAAAAGCAAAGATAATGAAGCCTTGTATCTTTTTTAATAGTTCCAGAGGATGTCGGAATGGAGCTAATTGTGCCTTTCAGCATGATGCATCATATCAGCCACAACAAGGTAATCCTGTGTCAGGGATACAAAGTTCAAAGAGAATGAAAATGGATAATGAGATCAGCAGTTAA 1185 0.4 VKLFLSEESPSQVGLNSQDHLQAKISSLLHQGEASSDDILPPGFEGTHASSQFDIKPSQIPVINWINPPKIVLDLTWQVVAGEESKEIVDQHQREMRVLEAIYPRISSIPPNPAVPVNVEDSHYIDDHTVVIPITPVEDGDVAADTLSPGILDGSHSATSMSMASDVAAASVALTSLVKNSEHGNLIDRELLNNILNNPEVIEKLVRDYGAQNNAQYVQNMGSSSGVYSYAPNRVNQVETTTTSSNAFSSTSSYTHTTGGQMAPTISTQWHPRPVMSSAIAATSVEAPSTKDVNYYKSLIQQHGGDKQEALPYSSNNRQNQQPLSNYDTVHNFRAKGSKAKIMKPCIFFNSSRGCRNGANCAFQHDASYQPQQGNPVSGIQSSKRMKMDNEISS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1648g00001 394 SUPERFAMILY CCCH zinc finger 345 368 IPR036855 GO:0046872
Trme1648g00001 394 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Trme1648g00001 394 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 219 390 - -
Trme1648g00001 394 MobiDBLite consensus disorder prediction 241 261 - -
Trme1648g00001 394 MobiDBLite consensus disorder prediction 368 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1648g00001 Trme-Chr1648 959 2384 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme1648g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1648g00001 - - cam:101501814 612.838