Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme164829g00001 GTCGTTTCCGACCCGGAAGAACAACCACTCAAGCTGCGAAATGCAACCGAACTCTACGTCTGCAACCTTCCTAGAACCTATGACACCCAACAGCTACTCAATATCTTTACTCCTCACGGAACGGTTCTATCTACACAGGTTTGCCGGAATGTGGAGACAGGTCAGAGTAAGGGGAGTGCTTATGTCAAGATGGGATCTTATAATGC 206 0.4806 VVSDPEEQPLKLRNATELYVCNLPRTYDTQQLLNIFTPHGTVLSTQVCRNVETGQSKGSAYVKMGSYNA 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme164829g00001 69 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 69 IPR000504 GO:0003723
Trme164829g00001 69 Gene3D - 2 69 IPR012677 -
Trme164829g00001 69 SUPERFAMILY RNA-binding domain, RBD 5 67 IPR035979 GO:0003676
Trme164829g00001 69 PANTHER OS02G0815200 PROTEIN 7 68 - -
Trme164829g00001 69 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 64 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme164829g00001 Trme-Chr164829 2 511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme164829g00001 15 66 Eukaryotic Initiation Factors Gene Family AT4G34110 40.385 2.45e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme164829g00001 - - tpra:123889530 129.413