Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16481g00001 CTTGCAGCAAAGTTCCGTAATAGCGGACAAACTTGTGTTTGTGCAAATAGAATTCTTGTGCAAGAAGGTATATATGACAAATTTGCAAACGCATTGCTTGATGCTGTTCAGAGTATGAAAGTTGGAGATGGTTTTACTGAAGGTGTGGCTCAGGGCCCTCTGATCAATGAAGCTGCTGTCAAAAAGGTTCGTGTCCTCTTATTATTTGATTTTCTATATGCACCATTGCTGGGTGTGTTCTACAACTCTTGA 252 0.4048 LAAKFRNSGQTCVCANRILVQEGIYDKFANALLDAVQSMKVGDGFTEGVAQGPLINEAAVKKVRVLLLFDFLYAPLLGVFYNS 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16481g00001 83 Pfam Aldehyde dehydrogenase family 2 64 IPR015590 GO:0016491
Trme16481g00001 83 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 1 65 - -
Trme16481g00001 83 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 5 16 IPR016160 GO:0016491
Trme16481g00001 83 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 1 68 IPR016163 GO:0016620
Trme16481g00001 83 SUPERFAMILY ALDH-like 2 64 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16481g00001 Trme-Chr16481 356 1415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16481g00001 1 67 Aldehyde Dehydrogenase Gene Family AT1G79440 71.642 1.33e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16481g00001 K17761 - gmx:100793318 118.242