Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1647g00001 GGCGGTGAAAGTGACTGTTTTTATGTCGTTGGAAGCGGAGAATTTGAAGTCCTGGCTACTCAGGAAGAAAAAGACGGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCCGAAAAACTATCGTGCTTTGGAGAACTTGCTCTGATGTACAACAAACCACTCCAGGCTTCTGTACGTGCCGTAACAAAAGGAACTCTTTGGGCTTTAAAGCGAGAAGATTTTCGAGGGATTTTAATGTCAGAATTCTCTAACTTATCATCGTTGAAGTTACTTCGGTCTGTAGATCTCCTCTCAAGATTGTCAATTCTACAACTGAGTCAGATTTCCGACTCCCTTTCTGAAGTTACCTTCTCAAGCGGACAGACAATAATCGATAAAAATGAAGTCCTTGCATTGTACATTATCCAAAAGGGACGTGTAAAATTAACTTTCGATGCTGATTTATTGACAAGTCCAAATACCTTAAGCCTCAAGTCTGACATCGAAAATGAGGACGATGATGTACAGAGCGGAACAGAACTGTCGATAGAGAAGCCCGAGGGAAGCTATTTCGGTGAATGGTCTCTTCTTGATGAACAAATTGGTTCCTTAACTGCTGTTGCTGAGGAAGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCAGTTATTGGCTCCTTACAAAAGATTTCTCAGGAAGATCACAAGTATGTCTTAATATGTCCATGGCTTAGTGGTTTATGCTTATGA 735 0.4109 GGESDCFYVVGSGEFEVLATQEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVTFSSGQTIIDKNEVLALYIIQKGRVKLTFDADLLTSPNTLSLKSDIENEDDDVQSGTELSIEKPEGSYFGEWSLLDEQIGSLTAVAEEDVVCALLTKDKFESVIGSLQKISQEDHKYVLICPWLSGLCL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1647g00001 244 Gene3D Jelly Rolls 88 234 IPR014710 -
Trme1647g00001 244 Pfam Cyclic nucleotide-binding domain 2 80 IPR000595 -
Trme1647g00001 244 Pfam Cyclic nucleotide-binding domain 115 219 IPR000595 -
Trme1647g00001 244 SMART cnmp_10 96 234 IPR000595 -
Trme1647g00001 244 SUPERFAMILY cAMP-binding domain-like 87 224 IPR018490 -
Trme1647g00001 244 SUPERFAMILY cAMP-binding domain-like 1 80 IPR018490 -
Trme1647g00001 244 Gene3D Jelly Rolls 1 87 IPR014710 -
Trme1647g00001 244 PANTHER CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN 2 227 - -
Trme1647g00001 244 CDD CAP_ED 96 220 IPR000595 -
Trme1647g00001 244 CDD CAP_ED 1 79 IPR000595 -
Trme1647g00001 244 ProSiteProfiles cAMP/cGMP binding motif profile. 1 79 IPR000595 -
Trme1647g00001 244 ProSiteProfiles cAMP/cGMP binding motif profile. 96 220 IPR000595 -
Trme1647g00001 244 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 86 233 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1647g00001 1 231 PP2C-type Phosphatase Gene Family AT2G20050 68.966 1.18e-93 295