Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16471g00001 ATGGTTTCTGTGTTAATCCTTGAATCATATGCAAGTTTTGTCGCGAAAAATGTTTCTTTAATATCTGAAAGTAAATCAACTAATGATACGAGTAGAGGACAACCAACAGCTCCGGTAATATCTTCTACAACCACTAGTATTGCAGAAAGCAATTCCTCCACTTCTAAACTTGAAGAGGAGCTTAAAATTGCTTCTAGGCTGCGAAAGTTCACTTTCAATGAACTTAAGTTGGCAACAAGAAATTTCCGGCCCGAGAGTTTTCTTGGCGAAGGTGGGTTTGGTTGTGTTTTCAAGGGTTGGATCGAAGAAAATGGAACTGCTGCAGTGAAACCAGGCACAGGGCTTACTGTCGCTGTAAAAACTCTTAACCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAGGTAAATTTTCTTGGCGATCTCGTTCATCAAAATCTTGTTAAACTTGTAGGTTACTGCATTGAAGATGATCAAAGGCTGCTCGTGTATGAGTTCATGGCTCGGGGAAGCTTGGAAAATCACTTATTTAGGA 538 0.4071 MVSVLILESYASFVAKNVSLISESKSTNDTSRGQPTAPVISSTTTSIAESNSSTSKLEEELKIASRLRKFTFNELKLATRNFRPESFLGEGGFGCVFKGWIEENGTAAVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHQNLVKLVGYCIEDDQRLLVYEFMARGSLENHLFR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16471g00001 179 FunFam Serine/threonine-protein kinase BIK1 49 167 - -
Trme16471g00001 179 Pfam Protein tyrosine and serine/threonine kinase 87 177 IPR001245 GO:0004672|GO:0006468
Trme16471g00001 179 Gene3D Phosphorylase Kinase; domain 1 55 167 - -
Trme16471g00001 179 MobiDBLite consensus disorder prediction 25 53 - -
Trme16471g00001 179 ProSitePatterns Protein kinases ATP-binding region signature. 88 120 IPR017441 GO:0005524
Trme16471g00001 179 ProSiteProfiles Protein kinase domain profile. 82 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16471g00001 179 PANTHER OS01G0588500 PROTEIN-RELATED 46 179 - -
Trme16471g00001 179 SUPERFAMILY Protein kinase-like (PK-like) 54 178 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16471g00001 Trme-Chr16471 43 917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16471g00001 70 178 Glycoside Hydrolase AT3G07070 55.046 1.52e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme16471g00001 PK_Tyr_Ser-Thr 7.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16471g00001 - - psat:127119571 303.138