Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme164654g00001 GTGAAGTTCACAGCTGATGAGTTACGTCGTATTATGGACTACAAGCACAACATTCGTAATATGTCTGTCATTGCTCATGTTGATCACGGAAAATCAACTTTGACAGATTCCCTTGTTGCTGCTGCTGGAATTATAGCACAAGAGGTTGCTGGAGATGTTCGGATGACAGATACCCGTGCTGATGAAGCTGAGCGTGGTATCACTATCAAGTCTACCGGTAT 221 0.4389 VKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme164654g00001 73 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 72 IPR027417 -
Trme164654g00001 73 Gene3D - 2 73 IPR027417 -
Trme164654g00001 73 PRINTS GTP-binding elongation factor signature 64 72 IPR000795 GO:0003924|GO:0005525
Trme164654g00001 73 PRINTS GTP-binding elongation factor signature 20 33 IPR000795 GO:0003924|GO:0005525
Trme164654g00001 73 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 57 72 IPR031157 -
Trme164654g00001 73 Pfam Elongation factor Tu GTP binding domain 16 72 IPR000795 GO:0003924|GO:0005525
Trme164654g00001 73 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 6 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme164654g00001 Trme-Chr164654 58 511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme164654g00001 1 73 Eukaryotic Initiation Factors Gene Family AT1G56070 100.000 6.04e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme164654g00001 K03234 - thj:104815718 144.05