Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16464g00001 GTTGTTTTGCCTGTATTTTATGGTGTTACCCCTTCGTTTATACGTGAATATGCTAAGGAAACTTTTGGAGAAGCTACCGATAAAAGTGATAGCCGTGCCCGTAATGTGGATCGCCAGCAAAATCCACAAAAGGAAGCACTCATCGATGCTTCGCACTTGGCTGGTTGGGATATGGCTAATTACAGTAATGAAAGCATGGTTGTGAAGAAAATCGTTGCCCAAGTTTTGCAAACACTAGACAAAAAATACTTACCTATCCCAGATTATCCTGTTGGACTAGAATCCCATGCGAAACGCATGATTCGGTTTTTAAGACAGAATACAAGAGATCAAAGCTTCCTTGCTAATATTAGAGAAGTTTGGGGGAAAGATCGGGGTCCAATCGATTTACAAGAACAACTTCTTTCAGATATCCTCAAAAAAGGAAATATAAAGGTGCATAGTGTTGAGTGGGGAAAAGCTATGATCAATGAACGACTTTGCACAAAACGGGCACTTGTTGTACTAGATGATGTGAGTACGCGTGAGCAATTAGATGCACTATGCGGAAGTCGGAATGGGATTGGTCCGGGAAGTATAATAATCATAACAACAAGAGATGTGTGTCTACTTAATATCACTAAAGTTGACTTTATTTATAAAGTAGAGGGATTGAATGCACCAGAGTCCCTTAAACTTTTCAATTGGCACGCATTTAAGGCGGAGAGTCCAACTAAAGGTTTCCTTAGACCCTCAGGAGATGTAGTTTCTTATTGTGGTGGACTACCATTAGCTCTTGAAGTCCTTGGATCTTACCTATTCAACAGGCGAAAAAAAGAGTGGAACAGTGTATTATCAAAGCTAAAACAGATACCCAATGATCAAATCCATGAAAAACTAAAAATAAGCTTTGATGGTTTAAGGGATCGTATGGAGAAGGATATATTTCTTGATGTCTGTTGTTTCTTTATCGGTAAGGATATAGCTTATGTTACGGAGATATTAAATGGTTGTGGGTTTTGTTAA 1005 0.3881 VVLPVFYGVTPSFIREYAKETFGEATDKSDSRARNVDRQQNPQKEALIDASHLAGWDMANYSNESMVVKKIVAQVLQTLDKKYLPIPDYPVGLESHAKRMIRFLRQNTRDQSFLANIREVWGKDRGPIDLQEQLLSDILKKGNIKVHSVEWGKAMINERLCTKRALVVLDDVSTREQLDALCGSRNGIGPGSIIIITTRDVCLLNITKVDFIYKVEGLNAPESLKLFNWHAFKAESPTKGFLRPSGDVVSYCGGLPLALEVLGSYLFNRRKKEWNSVLSKLKQIPNDQIHEKLKISFDGLRDRMEKDIFLDVCCFFIGKDIAYVTEILNGCGFC 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16464g00001 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 311 IPR027417 -
Trme16464g00001 334 Gene3D - 1 86 IPR035897 -
Trme16464g00001 334 PRINTS Disease resistance protein signature 159 173 - -
Trme16464g00001 334 PRINTS Disease resistance protein signature 252 266 - -
Trme16464g00001 334 Gene3D - 217 301 IPR042197 -
Trme16464g00001 334 Gene3D - 95 210 IPR027417 -
Trme16464g00001 334 Pfam NB-ARC domain 147 287 IPR002182 GO:0043531
Trme16464g00001 334 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 328 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16464g00001 Trme-Chr16464 136 1393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16464g00001 130 333 WRKY Transcription Factor Family AT5G45050 37.561 4.39e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16464g00001 - - tpra:123922730 607.446