Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1644g00001 CAAAACATAACCCCTACTGTGGATGGTGATGATGTTTGTAGAAACAATACTTGCAAAGATCCACTACGAGAATCTAATGAAATAAACGAAGTAGAGGAAAGAGGCCCAAAGGAAGGACTAATTAATTATGACAAAGATAGAGAGATGGAAGATGTTGCTCAGAGGGTCAATCCTGTAGCATGTGAAGAAGAGCCAACGCAAGTTTTGGAATCTAATGAAAAAGGTAAAGAAGAGGAAATAGGTTTAAAGGAAGGATTGATTAGTTATGACAAAAATAGAGAGATGGAAGATGTTGCTCACTGGGTCAATCCGATAGTATGTGGAGAAGAAGAGCCAACAAAAGTATTGGAATTTAAAAAGGGTACGCATGTATTAGATTTGGATAAAAACAAGAGAGCAAGAAGCATGGTGACCCGGTCTACCAATAAAGTAGCTCAGTCCTCTTCAAATCCAAAGCAGGTTCTGAAAACTTCTCGCATATTGAAGGGAGGACTGAAAAATGATCAACATTCAATGACTCAAATTCTAACAGAGTCACTAGCCTGTAACAAATTTGATAATGTTCCAAACAAAATTGATCAATGTAAAGATGATCAGAACATTATTGCAAAAAACAAACATAAACAAAGCCGTAAAGAAAACGTGGCAGAAGATAACTCCATGACTTCCAAGGTGGAGAAAAAAACATTTCCATCTTTTGAATCTTTTATAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCATTGTTTACCGTGCCCAAAGAACAACTGATGGAAAAAGACTTGCTATAAAATGTCCTCATAGTAATGCTCATAAAAACCATGTAAATAATGAGCGGAATATGCTTGAGCGTTTTGGGGGTAAAAGCTTTATTATAAAGTTTGAAGGTTCGTTCAAAAGTGGCAACAGTGACTGCTTTGTTTTAGAACATTTTGAGCATGACAGACCTGAGGTTTTGAAAAGAGAAATTGATATCAGTGAGCTACAGTGGTATGCGTTTTGCATGTTCAAGGCACTTGCGTGCTTGCACAGAGAGGGAGTCGTTCACCGAGATGTCAAACCTGGAAACTTCCTTTTCTCTCGAAAGCTTAAGAAAGGCTACCTTATTGACTTCAACCTTGCCATGGATTTAAAGCAGAAGTACAATATCGGAAGTAAATCAAAACCAAGCGTTGATGCATCCAATAATATTCCTCTGCCTTCTGGTCCTGCCCAGGTGGTTCAAGACAAGAATCTTGGAGGAATCAAGTCTCTAACATCCAATAAAAGGGAATTGACAGATCATAGGAAATATTCTGAAATTAATAGGCATATGAAGCCAAAGGCTAATGCTGGTCATCTGAAAAATTGTCCTGATAAGGCTGTTGCGAATTTACGTAGAGCACCAGGAGCAGATGGCTCAGGTATAACCTCTGCCAAAGATATTACTAGCACTAAGACTGCTTCTGCTGACAGGCTCCGAGAACCGATACCTTTCCGAGGAAGAAAGGAGCTTATCAGCCTCGTGCAGAATTCTATGCAATGTGCAAACAGTAGTTCAATTAAAAGTCCTTCTTCTCAGAGGAAAAGGGTTACTGCTCCTTCAAGCAAGGCAGATGGCAGGACACTTCATCTTACACCGATGCCTATACATTCATCTATGGTTGC 1649 0.3924 QNITPTVDGDDVCRNNTCKDPLRESNEINEVEERGPKEGLINYDKDREMEDVAQRVNPVACEEEPTQVLESNEKGKEEEIGLKEGLISYDKNREMEDVAHWVNPIVCGEEEPTKVLEFKKGTHVLDLDKNKRARSMVTRSTNKVAQSSSNPKQVLKTSRILKGGLKNDQHSMTQILTESLACNKFDNVPNKIDQCKDDQNIIAKNKHKQSRKENVAEDNSMTSKVEKKTFPSFESFIIEEEEGSGGYGIVYRAQRTTDGKRLAIKCPHSNAHKNHVNNERNMLERFGGKSFIIKFEGSFKSGNSDCFVLEHFEHDRPEVLKREIDISELQWYAFCMFKALACLHREGVVHRDVKPGNFLFSRKLKKGYLIDFNLAMDLKQKYNIGSKSKPSVDASNNIPLPSGPAQVVQDKNLGGIKSLTSNKRELTDHRKYSEINRHMKPKANAGHLKNCPDKAVANLRRAPGADGSGITSAKDITSTKTASADRLREPIPFRGRKELISLVQNSMQCANSSSIKSPSSQRKRVTAPSSKADGRTLHLTPMPIHSSMVA 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1644g00001 550 FunFam Probable serine/threonine-protein kinase DDB_G0291918 228 394 - -
Trme1644g00001 550 SMART serkin_6 236 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1644g00001 550 MobiDBLite consensus disorder prediction 13 39 - -
Trme1644g00001 550 SUPERFAMILY Protein kinase-like (PK-like) 220 382 IPR011009 -
Trme1644g00001 550 MobiDBLite consensus disorder prediction 1 39 - -
Trme1644g00001 550 MobiDBLite consensus disorder prediction 387 407 - -
Trme1644g00001 550 ProSiteProfiles Protein kinase domain profile. 236 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1644g00001 550 PANTHER CASEIN KINASE-RELATED 236 449 - -
Trme1644g00001 550 MobiDBLite consensus disorder prediction 387 403 - -
Trme1644g00001 550 Pfam Protein kinase domain 240 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1644g00001 550 MobiDBLite consensus disorder prediction 510 550 - -
Trme1644g00001 550 Gene3D Transferase(Phosphotransferase) domain 1 199 391 - -
Trme1644g00001 550 MobiDBLite consensus disorder prediction 462 484 - -
Trme1644g00001 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Trme1644g00001 550 MobiDBLite consensus disorder prediction 510 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1644g00001 Trme-Chr1644 1 2979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1644g00001 243 375 Core Cell Cycle Gene Families AT1G66750 33.333 2.13e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Trme1644g00001 Pkinase 3.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1644g00001 K02214 - tpra:123883444 616.69