Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16445g00001 ACCGAGACCGGGCTAAACAAAGAAATTTCAGATAATGGATCCAGCGGGAAGCGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGCAGCACAGCTGGTGGAAGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATATCATCACCAAAAGACTTTTTGCGGGTATTGAGCTTCAAAAGAAAATCGAATGTAGCAGATGGTGAAAGAAGCAGCCTCCTYAATTCAGACTCTAAGACAGCTGCAGACAGTACTAATATGGCCTCCATATCTGAAATTTCATGGTCAAGATGTAATTCTCTTCCTGTTTCACATGCACCAAATCTGTCCCCTTCAGTTGCTACRCCCGTGTCTGCAAGGACATATAATGAACAMCAGATTAAGCCACATAAAGATGCTAAATCTAAGGTTTCAAGGTGCCTAACAATACCTGCACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTAATACCCGCACCGACCAAGAACAACAAGATACAAATGACGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGAGGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAATACCTTTAAAATGGAATGCAATTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCACCACAAAAGGAACCAAGAAATGTGAAATATGCGGGAAAGAGGTTCAGAATTTACCCGTAACCTTGCTCCGCATAACCAGCACTGTTCAACAAAGAAACGGACAGAATCAGCACAACTTAAGTTCAGAAGCAATAAGGTGCTTT 837 0.4134 TETGLNKEISDNGSSGKRPDISLQVPPRPLGFGSTAGGRVLDHSQSFSKGISSPKDFLRVLSFKRKSNVADGERSSLLNSDSKTAADSTNMASISEISWSRCNSLPVSHAPNLSPSVATPVSARTYNEXQIKPHKDAKSKVSRCLTIPARNVVIVRSVSFNTRTDQEQQDTNDDQITPVPVEVTEDEEIPEEEAVCRICLDVCDERNTFKMECNCKGDLRLVHEECLIKWFTTKGTKKCEICGKEVQNLPVTLLRITSTVQQRNGQNQHNLSSEAIRCF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16445g00001 279 PANTHER OS02G0165000 PROTEIN 43 270 - -
Trme16445g00001 279 Pfam RING-variant domain 196 242 IPR011016 GO:0008270
Trme16445g00001 279 SMART ringv_2 195 243 IPR011016 GO:0008270
Trme16445g00001 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 250 IPR013083 -
Trme16445g00001 279 SUPERFAMILY RING/U-box 192 246 - -
Trme16445g00001 279 ProSiteProfiles Zinc finger RING-CH-type profile. 188 249 IPR011016 GO:0008270
Trme16445g00001 279 MobiDBLite consensus disorder prediction 1 39 - -
Trme16445g00001 279 CDD RING_CH-C4HC3_MARCH 196 243 - -
Trme16445g00001 279 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16445g00001 Trme-Chr16445 143 1461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16445g00001 209 249 C3H Transcription Factor Family AT5G08750 48.780 4.90e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16445g00001 - - vun:114188987 409.068